Strain Fitness in Variovorax sp. SCN45 around GFF203

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF202 and GFF203 are separated by 21 nucleotidesGFF203 and GFF204 are separated by 247 nucleotidesGFF204 and GFF205 are separated by 42 nucleotides GFF202 - Transcriptional regulator, LysR family, at 229,867 to 230,781 GFF202 GFF203 - hypothetical protein, at 230,803 to 231,339 GFF203 GFF204 - hypothetical protein, at 231,587 to 232,216 GFF204 GFF205 - Nitroreductase family protein, at 232,259 to 232,879 GFF205 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 230.090 kb on - strand, within GFF202at 230.090 kb on - strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.195 kb on - strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.943 kb on - strand, within GFF203at 230.943 kb on - strand, within GFF203at 231.086 kb on + strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.686 kb on + strand, within GFF204at 231.686 kb on + strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.788 kb on + strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.789 kb on - strand, within GFF204at 231.843 kb on - strand, within GFF204at 231.890 kb on + strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 231.891 kb on - strand, within GFF204at 232.143 kb on - strand, within GFF204at 232.143 kb on - strand, within GFF204at 232.148 kb on + strand, within GFF204at 232.148 kb on + strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.149 kb on - strand, within GFF204at 232.214 kb on + strandat 232.214 kb on + strandat 232.214 kb on + strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strandat 232.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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230,090 - GFF202 0.24 -0.4
230,090 - GFF202 0.24 -0.2
230,194 + GFF202 0.36 +0.5
230,194 + GFF202 0.36 +0.2
230,195 - GFF202 0.36 -0.0
230,380 + GFF202 0.56 -1.4
230,380 + GFF202 0.56 -1.0
230,380 + GFF202 0.56 -0.3
230,380 + GFF202 0.56 +0.6
230,380 + GFF202 0.56 -0.2
230,380 + GFF202 0.56 +0.5
230,380 + GFF202 0.56 -0.5
230,380 + GFF202 0.56 +0.0
230,381 - GFF202 0.56 -0.3
230,381 - GFF202 0.56 -0.9
230,381 - GFF202 0.56 +0.6
230,381 - GFF202 0.56 +0.1
230,381 - GFF202 0.56 +0.5
230,381 - GFF202 0.56 +0.2
230,381 - GFF202 0.56 +0.3
230,857 + GFF203 0.10 -0.0
230,857 + GFF203 0.10 -0.2
230,857 + GFF203 0.10 -2.3
230,858 - GFF203 0.10 -0.1
230,858 - GFF203 0.10 +2.4
230,858 - GFF203 0.10 +0.4
230,858 - GFF203 0.10 +0.1
230,858 - GFF203 0.10 -0.3
230,942 + GFF203 0.26 -1.6
230,942 + GFF203 0.26 -0.4
230,943 - GFF203 0.26 +0.9
230,943 - GFF203 0.26 -1.3
231,086 + GFF203 0.53 -0.7
231,087 - GFF203 0.53 -1.0
231,087 - GFF203 0.53 +1.0
231,087 - GFF203 0.53 +0.6
231,686 + GFF204 0.16 +0.0
231,686 + GFF204 0.16 -0.0
231,687 - GFF204 0.16 +0.5
231,687 - GFF204 0.16 +0.6
231,687 - GFF204 0.16 -0.0
231,716 + GFF204 0.20 -1.2
231,716 + GFF204 0.20 -1.5
231,717 - GFF204 0.21 -1.8
231,717 - GFF204 0.21 -0.1
231,717 - GFF204 0.21 +1.0
231,788 + GFF204 0.32 -0.4
231,788 + GFF204 0.32 -0.6
231,788 + GFF204 0.32 -0.6
231,788 + GFF204 0.32 +1.2
231,788 + GFF204 0.32 -0.1
231,788 + GFF204 0.32 -0.6
231,789 - GFF204 0.32 -0.2
231,789 - GFF204 0.32 +0.0
231,789 - GFF204 0.32 +0.4
231,789 - GFF204 0.32 -0.2
231,789 - GFF204 0.32 -0.6
231,789 - GFF204 0.32 -1.0
231,789 - GFF204 0.32 +2.4
231,843 - GFF204 0.41 -0.2
231,890 + GFF204 0.48 -0.2
231,891 - GFF204 0.48 +0.1
231,891 - GFF204 0.48 -0.4
231,891 - GFF204 0.48 -0.3
231,891 - GFF204 0.48 -0.4
232,143 - GFF204 0.88 +0.1
232,143 - GFF204 0.88 -0.3
232,148 + GFF204 0.89 -0.2
232,148 + GFF204 0.89 +1.4
232,149 - GFF204 0.89 -0.0
232,149 - GFF204 0.89 -1.6
232,149 - GFF204 0.89 -0.2
232,214 + +0.0
232,214 + -1.0
232,214 + -0.3
232,215 - -1.1
232,215 - +0.0
232,215 - -0.9
232,215 - +1.8
232,215 - -0.2

Or see this region's nucleotide sequence