Experiment: M9 with calcium pantothenate 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1849 and GFF1850 are separated by 88 nucleotides GFF1850 and GFF1851 overlap by 8 nucleotides GFF1851 and GFF1852 are separated by 23 nucleotides
GFF1849 - FIG00347667: hypothetical protein, at 523,910 to 524,701
GFF1849
GFF1850 - Tetracenomycin polyketide synthesis O-methyltransferase TcmP, at 524,790 to 525,548
GFF1850
GFF1851 - TOMM biosynthesis cyclodehydratase (protein C) / TOMM biosynthesis docking scaffold (protein D), at 525,541 to 527,778
GFF1851
GFF1852 - FHA domain protein, at 527,802 to 528,740
GFF1852
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 524.612 kb on + strand, within GFF1849 at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.663 kb on + strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.664 kb on - strand at 524.684 kb on + strand at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.868 kb on + strand, within GFF1850 at 524.869 kb on - strand, within GFF1850 at 524.869 kb on - strand, within GFF1850 at 525.210 kb on + strand, within GFF1850 at 525.210 kb on + strand, within GFF1850 at 525.211 kb on - strand, within GFF1850 at 525.211 kb on - strand, within GFF1850 at 525.416 kb on + strand, within GFF1850 at 525.418 kb on + strand, within GFF1850 at 525.418 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.435 kb on + strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.436 kb on - strand, within GFF1850 at 525.504 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.724 kb on + strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.725 kb on - strand at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.835 kb on + strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 525.836 kb on - strand, within GFF1851 at 526.027 kb on + strand, within GFF1851 at 526.027 kb on + strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.028 kb on - strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.792 kb on + strand, within GFF1851 at 526.793 kb on - strand, within GFF1851 at 526.793 kb on - strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.050 kb on + strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.051 kb on - strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.091 kb on + strand, within GFF1851 at 527.161 kb on + strand, within GFF1851 at 527.161 kb on + strand, within GFF1851 at 527.162 kb on - strand, within GFF1851 at 527.307 kb on - strand, within GFF1851 at 527.699 kb on - strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.770 kb on + strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.771 kb on - strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.794 kb on + strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.795 kb on - strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.801 kb on + strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.802 kb on - strand at 527.911 kb on + strand, within GFF1852 at 527.911 kb on + strand, within GFF1852 at 527.911 kb on + strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 527.912 kb on - strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.201 kb on + strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.202 kb on - strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.468 kb on + strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.469 kb on - strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.588 kb on + strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.589 kb on - strand, within GFF1852 at 528.625 kb on + strand, within GFF1852 at 528.625 kb on + strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.626 kb on - strand, within GFF1852 at 528.703 kb on - strand at 528.738 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.774 kb on + strand at 528.774 kb on + strand at 528.775 kb on - strand at 528.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL remove 524,612 + GFF1849 0.89 +1.0 524,663 + -0.2 524,663 + -0.4 524,663 + +0.4 524,663 + +0.8 524,663 + -0.9 524,663 + -0.3 524,663 + +0.5 524,664 - -0.4 524,664 - -0.3 524,664 - +0.3 524,664 - +0.5 524,664 - -0.0 524,684 + +0.8 524,868 + GFF1850 0.10 -0.1 524,868 + GFF1850 0.10 -0.6 524,868 + GFF1850 0.10 -1.3 524,868 + GFF1850 0.10 +0.8 524,868 + GFF1850 0.10 +1.1 524,868 + GFF1850 0.10 -1.2 524,868 + GFF1850 0.10 -1.3 524,868 + GFF1850 0.10 -0.7 524,869 - GFF1850 0.10 -0.2 524,869 - GFF1850 0.10 -0.3 525,210 + GFF1850 0.55 -0.5 525,210 + GFF1850 0.55 +1.5 525,211 - GFF1850 0.55 -0.4 525,211 - GFF1850 0.55 +0.7 525,416 + GFF1850 0.82 -0.6 525,418 + GFF1850 0.83 +0.3 525,418 + GFF1850 0.83 -1.4 525,435 + GFF1850 0.85 -0.5 525,435 + GFF1850 0.85 -0.3 525,435 + GFF1850 0.85 +0.1 525,436 - GFF1850 0.85 -0.2 525,436 - GFF1850 0.85 +0.4 525,436 - GFF1850 0.85 +0.1 525,436 - GFF1850 0.85 -0.7 525,436 - GFF1850 0.85 +0.3 525,436 - GFF1850 0.85 +1.1 525,504 + +0.0 525,724 + +0.8 525,724 + -0.6 525,724 + -1.2 525,724 + -0.1 525,724 + -1.4 525,724 + -0.6 525,724 + +0.7 525,725 - +0.6 525,725 - -0.5 525,725 - -0.2 525,725 - +0.2 525,725 - +0.5 525,725 - -0.3 525,835 + GFF1851 0.13 -0.5 525,835 + GFF1851 0.13 -0.3 525,835 + GFF1851 0.13 +1.3 525,835 + GFF1851 0.13 -0.2 525,835 + GFF1851 0.13 +1.8 525,836 - GFF1851 0.13 -0.5 525,836 - GFF1851 0.13 +1.3 525,836 - GFF1851 0.13 -0.3 525,836 - GFF1851 0.13 -0.3 525,836 - GFF1851 0.13 -1.3 526,027 + GFF1851 0.22 -1.5 526,027 + GFF1851 0.22 +0.7 526,028 - GFF1851 0.22 +0.2 526,028 - GFF1851 0.22 -1.0 526,028 - GFF1851 0.22 -0.3 526,792 + GFF1851 0.56 -0.5 526,792 + GFF1851 0.56 -0.5 526,792 + GFF1851 0.56 -1.0 526,792 + GFF1851 0.56 +0.8 526,792 + GFF1851 0.56 -0.6 526,792 + GFF1851 0.56 -0.6 526,792 + GFF1851 0.56 -1.2 526,792 + GFF1851 0.56 -0.0 526,792 + GFF1851 0.56 -2.0 526,793 - GFF1851 0.56 -0.4 526,793 - GFF1851 0.56 +0.1 527,050 + GFF1851 0.67 +0.3 527,050 + GFF1851 0.67 -0.4 527,050 + GFF1851 0.67 +0.6 527,051 - GFF1851 0.67 -0.6 527,051 - GFF1851 0.67 -1.1 527,051 - GFF1851 0.67 +0.7 527,091 + GFF1851 0.69 -0.6 527,091 + GFF1851 0.69 -0.8 527,091 + GFF1851 0.69 -0.2 527,161 + GFF1851 0.72 +0.2 527,161 + GFF1851 0.72 +0.2 527,162 - GFF1851 0.72 +0.2 527,307 - GFF1851 0.79 -0.2 527,699 - +0.2 527,770 + -1.0 527,770 + -0.0 527,770 + +0.0 527,770 + -2.3 527,770 + -0.2 527,770 + -0.5 527,770 + +0.3 527,771 - -0.4 527,771 - -0.5 527,771 - -0.4 527,771 - +0.0 527,771 - -0.3 527,771 - -0.3 527,771 - -0.6 527,794 + +0.3 527,794 + +0.3 527,794 + +0.2 527,794 + -0.1 527,794 + +0.2 527,794 + -1.2 527,794 + -0.4 527,794 + -0.2 527,794 + -0.6 527,795 - -0.8 527,795 - +0.2 527,795 - -0.5 527,795 - -0.2 527,795 - +0.3 527,801 + -1.0 527,801 + +0.1 527,801 + +0.3 527,801 + +0.3 527,801 + -0.5 527,801 + +0.3 527,801 + -0.4 527,801 + -0.8 527,802 - +1.4 527,802 - -2.1 527,802 - +0.4 527,802 - -0.5 527,802 - +0.0 527,802 - -0.1 527,911 + GFF1852 0.12 +0.8 527,911 + GFF1852 0.12 +0.8 527,911 + GFF1852 0.12 -0.1 527,912 - GFF1852 0.12 -1.1 527,912 - GFF1852 0.12 -0.4 527,912 - GFF1852 0.12 +0.2 527,912 - GFF1852 0.12 +0.1 527,912 - GFF1852 0.12 -1.0 527,912 - GFF1852 0.12 -0.9 527,912 - GFF1852 0.12 -0.2 527,912 - GFF1852 0.12 -0.3 527,912 - GFF1852 0.12 -0.4 528,201 + GFF1852 0.42 +0.1 528,201 + GFF1852 0.42 +0.4 528,201 + GFF1852 0.42 -0.3 528,201 + GFF1852 0.42 -0.6 528,201 + GFF1852 0.42 -1.1 528,201 + GFF1852 0.42 +0.9 528,201 + GFF1852 0.42 -0.3 528,201 + GFF1852 0.42 -0.4 528,201 + GFF1852 0.42 -0.2 528,202 - GFF1852 0.43 -0.3 528,202 - GFF1852 0.43 -1.9 528,202 - GFF1852 0.43 -0.6 528,202 - GFF1852 0.43 -0.2 528,202 - GFF1852 0.43 +0.1 528,468 + GFF1852 0.71 +0.5 528,468 + GFF1852 0.71 -0.5 528,468 + GFF1852 0.71 +0.3 528,468 + GFF1852 0.71 -0.7 528,468 + GFF1852 0.71 -1.1 528,468 + GFF1852 0.71 -0.5 528,468 + GFF1852 0.71 -0.1 528,468 + GFF1852 0.71 -0.2 528,468 + GFF1852 0.71 +0.2 528,469 - GFF1852 0.71 +0.6 528,469 - GFF1852 0.71 -0.5 528,469 - GFF1852 0.71 -0.1 528,469 - GFF1852 0.71 +0.4 528,469 - GFF1852 0.71 -0.3 528,469 - GFF1852 0.71 -0.3 528,469 - GFF1852 0.71 -0.5 528,469 - GFF1852 0.71 -0.2 528,588 + GFF1852 0.84 -0.4 528,588 + GFF1852 0.84 +0.8 528,588 + GFF1852 0.84 +0.8 528,588 + GFF1852 0.84 -1.1 528,589 - GFF1852 0.84 -0.3 528,589 - GFF1852 0.84 -0.1 528,589 - GFF1852 0.84 +0.8 528,589 - GFF1852 0.84 -1.1 528,589 - GFF1852 0.84 +0.3 528,589 - GFF1852 0.84 +0.2 528,589 - GFF1852 0.84 -1.0 528,589 - GFF1852 0.84 +1.5 528,625 + GFF1852 0.88 -0.8 528,625 + GFF1852 0.88 -0.3 528,626 - GFF1852 0.88 -1.4 528,626 - GFF1852 0.88 -0.8 528,626 - GFF1852 0.88 +0.3 528,703 - -0.7 528,738 + +1.5 528,748 + +0.3 528,748 + -0.7 528,748 + -0.6 528,748 + +1.2 528,749 - +1.1 528,774 + +0.6 528,774 + +0.3 528,775 - +0.5 528,775 - +0.0
Or see this region's nucleotide sequence