Strain Fitness in Variovorax sp. SCN45 around GFF1747

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1746 and GFF1747 are separated by 100 nucleotidesGFF1747 and GFF1748 are separated by 90 nucleotidesGFF1748 and GFF1749 are separated by 21 nucleotides GFF1746 - BUG/TctC family periplasmic protein, at 406,563 to 407,561 GFF1746 GFF1747 - FIG00799528: hypothetical protein, at 407,662 to 408,759 GFF1747 GFF1748 - Outer membrane lipoprotein, at 408,850 to 409,434 GFF1748 GFF1749 - Cystathionine beta-lyase (EC 4.4.1.8), at 409,456 to 410,670 GFF1749 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1 2at 406.851 kb on + strand, within GFF1746at 406.852 kb on - strand, within GFF1746at 406.863 kb on + strand, within GFF1746at 406.863 kb on + strand, within GFF1746at 406.899 kb on + strand, within GFF1746at 406.899 kb on + strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.900 kb on - strand, within GFF1746at 406.915 kb on - strand, within GFF1746at 407.139 kb on + strand, within GFF1746at 407.139 kb on + strand, within GFF1746at 407.140 kb on - strand, within GFF1746at 407.140 kb on - strand, within GFF1746at 407.217 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.394 kb on + strand, within GFF1746at 407.487 kb on + strandat 407.487 kb on + strandat 407.559 kb on + strandat 407.559 kb on + strandat 407.560 kb on - strandat 407.582 kb on - strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.740 kb on + strandat 407.741 kb on - strandat 407.741 kb on - strandat 407.741 kb on - strandat 408.095 kb on - strand, within GFF1747at 408.095 kb on - strand, within GFF1747at 408.095 kb on - strand, within GFF1747at 408.158 kb on - strand, within GFF1747at 408.197 kb on - strand, within GFF1747at 408.270 kb on + strand, within GFF1747at 408.271 kb on - strand, within GFF1747at 408.409 kb on + strand, within GFF1747at 408.409 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.481 kb on + strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.482 kb on - strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.526 kb on + strand, within GFF1747at 408.527 kb on - strand, within GFF1747at 408.527 kb on - strand, within GFF1747at 408.653 kb on - strandat 408.806 kb on - strandat 409.003 kb on + strand, within GFF1748at 409.003 kb on + strand, within GFF1748at 409.003 kb on + strand, within GFF1748at 409.063 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.222 kb on + strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.223 kb on - strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.249 kb on + strand, within GFF1748at 409.250 kb on - strand, within GFF1748at 409.250 kb on - strand, within GFF1748at 409.286 kb on - strand, within GFF1748at 409.286 kb on - strand, within GFF1748at 409.330 kb on + strand, within GFF1748at 409.330 kb on + strand, within GFF1748at 409.331 kb on - strand, within GFF1748at 409.432 kb on + strandat 409.433 kb on - strandat 409.622 kb on + strand, within GFF1749

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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406,851 + GFF1746 0.29 -1.5
406,852 - GFF1746 0.29 +0.0
406,863 + GFF1746 0.30 +0.3
406,863 + GFF1746 0.30 +0.5
406,899 + GFF1746 0.34 +0.0
406,899 + GFF1746 0.34 -0.5
406,900 - GFF1746 0.34 -0.9
406,900 - GFF1746 0.34 -0.0
406,900 - GFF1746 0.34 -0.6
406,900 - GFF1746 0.34 -1.3
406,900 - GFF1746 0.34 -0.7
406,915 - GFF1746 0.35 +0.3
407,139 + GFF1746 0.58 -0.9
407,139 + GFF1746 0.58 -0.7
407,140 - GFF1746 0.58 -2.5
407,140 - GFF1746 0.58 +0.5
407,217 + GFF1746 0.65 -1.3
407,394 + GFF1746 0.83 +1.1
407,394 + GFF1746 0.83 -0.3
407,394 + GFF1746 0.83 -0.1
407,487 + -0.2
407,487 + +0.3
407,559 + +1.4
407,559 + -0.3
407,560 - +0.8
407,582 - -0.4
407,740 + +0.4
407,740 + +0.1
407,740 + -0.3
407,740 + -0.0
407,740 + -0.2
407,741 - -1.1
407,741 - +0.2
407,741 - -0.2
408,095 - GFF1747 0.39 -0.9
408,095 - GFF1747 0.39 -0.4
408,095 - GFF1747 0.39 -0.7
408,158 - GFF1747 0.45 -0.8
408,197 - GFF1747 0.49 -0.4
408,270 + GFF1747 0.55 +0.1
408,271 - GFF1747 0.55 -0.3
408,409 + GFF1747 0.68 -0.7
408,409 + GFF1747 0.68 +2.4
408,481 + GFF1747 0.75 -2.1
408,481 + GFF1747 0.75 +0.3
408,481 + GFF1747 0.75 -0.5
408,481 + GFF1747 0.75 -0.5
408,482 - GFF1747 0.75 -0.4
408,482 - GFF1747 0.75 -0.6
408,526 + GFF1747 0.79 -0.5
408,526 + GFF1747 0.79 -0.5
408,526 + GFF1747 0.79 +0.5
408,527 - GFF1747 0.79 -0.1
408,527 - GFF1747 0.79 +2.1
408,653 - -0.6
408,806 - -1.2
409,003 + GFF1748 0.26 -1.1
409,003 + GFF1748 0.26 -1.3
409,003 + GFF1748 0.26 +1.0
409,063 + GFF1748 0.36 -0.7
409,222 + GFF1748 0.64 -0.7
409,222 + GFF1748 0.64 -0.2
409,222 + GFF1748 0.64 -1.2
409,223 - GFF1748 0.64 -0.2
409,223 - GFF1748 0.64 +0.8
409,223 - GFF1748 0.64 -2.1
409,249 + GFF1748 0.68 -0.6
409,249 + GFF1748 0.68 -0.3
409,249 + GFF1748 0.68 -0.2
409,250 - GFF1748 0.68 -0.6
409,250 - GFF1748 0.68 -0.6
409,286 - GFF1748 0.75 +0.8
409,286 - GFF1748 0.75 -1.3
409,330 + GFF1748 0.82 -0.1
409,330 + GFF1748 0.82 -1.5
409,331 - GFF1748 0.82 -0.7
409,432 + +0.0
409,433 - -1.4
409,622 + GFF1749 0.14 -0.3

Or see this region's nucleotide sequence