Strain Fitness in Variovorax sp. SCN45 around GFF1521

Experiment: M9 with calcium pantothenate 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL
114,884	+				-0.2
114,884	+				-0.9
114,885	-				+1.0
114,997	-				-0.7
115,004	+				+0.5
115,005	-				-0.0
115,005	-				-0.0
115,097	+				-0.1
115,205	+		GFF1520	0.19	-0.1
115,235	+		GFF1520	0.23	-1.8
115,235	+		GFF1520	0.23	-0.0
115,235	+		GFF1520	0.23	+0.4
115,236	-		GFF1520	0.23	-0.2
115,236	-		GFF1520	0.23	+0.8
115,425	-		GFF1520	0.47	-1.3
115,425	-		GFF1520	0.47	+1.1
115,554	-		GFF1520	0.63	-1.0
115,595	+		GFF1520	0.69	-1.4
115,595	+		GFF1520	0.69	-1.0
115,595	+		GFF1520	0.69	-1.6
115,595	+		GFF1520	0.69	-0.7
115,595	+		GFF1520	0.69	+0.0
115,595	+		GFF1520	0.69	+0.2
115,595	+		GFF1520	0.69	+0.1
115,595	+		GFF1520	0.69	-0.3
115,595	+		GFF1520	0.69	-1.5
115,596	-		GFF1520	0.69	-0.7
115,596	-		GFF1520	0.69	-1.2
115,596	-		GFF1520	0.69	-1.7
115,596	-		GFF1520	0.69	-0.4
115,596	-		GFF1520	0.69	-0.8
115,596	-		GFF1520	0.69	-0.2
115,822	-				-0.3
115,822	-				-1.4
116,038	+		GFF1521	0.17	-0.2
116,038	+		GFF1521	0.17	-0.2
116,196	+		GFF1521	0.32	-0.4
116,358	+		GFF1521	0.48	-0.6
116,413	-		GFF1521	0.54	-1.1
116,413	-		GFF1521	0.54	-0.4
116,413	-		GFF1521	0.54	-0.6
116,415	-		GFF1521	0.54	-0.6
116,472	+		GFF1521	0.59	+0.2
116,559	+		GFF1521	0.68	+0.7
116,559	+		GFF1521	0.68	-0.3
116,559	+		GFF1521	0.68	-0.3
116,559	+		GFF1521	0.68	-0.8
116,559	+		GFF1521	0.68	-1.1
116,559	+		GFF1521	0.68	-0.5
116,560	-		GFF1521	0.68	-0.8
116,560	-		GFF1521	0.68	+0.0
116,583	+		GFF1521	0.70	+1.1
116,583	+		GFF1521	0.70	+0.1
116,583	+		GFF1521	0.70	+0.1
116,583	+		GFF1521	0.70	-0.4
116,583	+		GFF1521	0.70	-0.0
116,583	+		GFF1521	0.70	-0.3
116,584	-		GFF1521	0.70	-0.8
116,584	-		GFF1521	0.70	-0.9
116,584	-		GFF1521	0.70	+0.2
116,584	-		GFF1521	0.70	-0.2
116,584	-		GFF1521	0.70	-2.4
116,584	-		GFF1521	0.70	-0.4
116,817	+				-0.4
116,818	-				-0.4
116,987	-				-1.4
116,987	-				-0.7
117,052	+				-0.8
117,052	+				+0.1
117,052	+				+0.2
117,053	-				+0.5
117,053	-				+0.2
117,053	-				-0.7
117,110	-				+0.3
117,172	+				+1.1
117,187	+				-0.2
117,188	-				-0.7
117,242	-		GFF1522	0.11	-0.1
117,242	-		GFF1522	0.11	+1.0
117,242	-		GFF1522	0.11	-0.7
117,340	+		GFF1522	0.15	+0.4
117,340	+		GFF1522	0.15	-0.6
117,340	+		GFF1522	0.15	+0.8
117,340	+		GFF1522	0.15	-0.2
117,340	+		GFF1522	0.15	-0.7
117,340	+		GFF1522	0.15	-0.5
117,341	-		GFF1522	0.15	-0.4
117,341	-		GFF1522	0.15	+0.3
117,427	+		GFF1522	0.18	+0.2
117,428	-		GFF1522	0.18	-0.6
117,428	-		GFF1522	0.18	-0.1
117,430	+		GFF1522	0.19	+0.1
117,430	+		GFF1522	0.19	-0.2
117,430	+		GFF1522	0.19	+0.5
117,431	-		GFF1522	0.19	-0.8
117,524	-		GFF1522	0.22	+0.2
117,524	-		GFF1522	0.22	+0.6
117,577	+		GFF1522	0.25	-0.3
117,577	+		GFF1522	0.25	+1.8
117,577	+		GFF1522	0.25	-0.9
117,578	-		GFF1522	0.25	-0.7
117,578	-		GFF1522	0.25	+0.6
117,616	+		GFF1522	0.26	-0.5
117,616	+		GFF1522	0.26	+0.5
117,616	+		GFF1522	0.26	-0.6
117,617	-		GFF1522	0.26	-1.3
117,617	-		GFF1522	0.26	-0.4
117,625	+		GFF1522	0.27	+1.8
117,625	+		GFF1522	0.27	+0.3
117,625	+		GFF1522	0.27	-0.0
117,625	+		GFF1522	0.27	+0.7
117,625	+		GFF1522	0.27	+0.1
117,626	-		GFF1522	0.27	-0.1
117,626	-		GFF1522	0.27	-0.0
117,626	-		GFF1522	0.27	-0.8
117,626	-		GFF1522	0.27	-0.1
117,652	+		GFF1522	0.28	-0.3
117,652	+		GFF1522	0.28	-0.3
117,652	+		GFF1522	0.28	+0.2
117,652	+		GFF1522	0.28	+0.4
117,652	+		GFF1522	0.28	+1.0
117,653	-		GFF1522	0.28	-0.4
117,653	-		GFF1522	0.28	-0.1
117,802	+		GFF1522	0.34	-0.7
117,802	+		GFF1522	0.34	+0.1
117,802	+		GFF1522	0.34	+0.7
117,802	+		GFF1522	0.34	-0.7
117,803	-		GFF1522	0.34	-0.5
117,803	-		GFF1522	0.34	-0.4
117,803	-		GFF1522	0.34	-0.3
117,875	-		GFF1522	0.37	-0.8