Strain Fitness in Variovorax sp. SCN45 around GFF1152

Experiment: M9 with calcium pantothenate 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1150 and GFF1151 overlap by 4 nucleotidesGFF1151 and GFF1152 are separated by 47 nucleotidesGFF1152 and GFF1153 are separated by 31 nucleotidesGFF1153 and GFF1154 overlap by 4 nucleotides GFF1150 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 467,475 to 469,172 GFF1150 GFF1151 - Nitrogen regulatory protein P-II, at 469,169 to 469,507 GFF1151 GFF1152 - Lysine decarboxylase family, at 469,555 to 470,145 GFF1152 GFF1153 - Diacylglycerol kinase (EC 2.7.1.107), at 470,177 to 470,584 GFF1153 GFF1154 - Putative transmembrane protein, at 470,581 to 471,147 GFF1154 Position (kb) 469 470 471Strain fitness (log2 ratio) -2 -1 0 1 2at 468.726 kb on + strand, within GFF1150at 468.726 kb on + strand, within GFF1150at 468.738 kb on + strand, within GFF1150at 468.739 kb on - strand, within GFF1150at 468.739 kb on - strand, within GFF1150at 468.930 kb on + strand, within GFF1150at 468.931 kb on - strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 469.005 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.127 kb on + strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.305 kb on - strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.724 kb on + strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.783 kb on + strand, within GFF1154at 470.840 kb on - strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.841 kb on + strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.842 kb on - strand, within GFF1154at 470.872 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.894 kb on + strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.895 kb on - strand, within GFF1154at 470.909 kb on - strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.026 kb on + strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154at 471.027 kb on - strand, within GFF1154

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL
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468,726 + GFF1150 0.74 -0.1
468,726 + GFF1150 0.74 -1.0
468,738 + GFF1150 0.74 +2.7
468,739 - GFF1150 0.74 +0.1
468,739 - GFF1150 0.74 -0.3
468,930 + GFF1150 0.86 -1.0
468,931 - GFF1150 0.86 -0.1
468,960 + GFF1150 0.87 +0.0
468,960 + GFF1150 0.87 -1.0
468,960 + GFF1150 0.87 +1.3
468,961 - GFF1150 0.88 -0.2
468,961 - GFF1150 0.88 +1.7
468,961 - GFF1150 0.88 -1.0
468,961 - GFF1150 0.88 -1.5
468,961 - GFF1150 0.88 +0.5
468,961 - GFF1150 0.88 +0.2
468,961 - GFF1150 0.88 -0.0
468,961 - GFF1150 0.88 -0.0
468,961 - GFF1150 0.88 +0.1
468,961 - GFF1150 0.88 -0.9
469,005 + +0.5
469,056 + -0.7
469,056 + +0.5
469,056 + -0.6
469,056 + -0.7
469,056 + -0.1
469,056 + -0.5
469,056 + -0.2
469,057 - +0.5
469,057 - -1.4
469,057 - +0.5
469,057 - +1.6
469,057 - +0.7
469,127 + +0.7
469,128 - -1.1
469,128 - -0.3
469,128 - +0.5
469,128 - +0.1
469,305 - GFF1151 0.40 -1.2
469,319 + GFF1151 0.44 +0.1
469,319 + GFF1151 0.44 +0.5
469,319 + GFF1151 0.44 -0.8
469,319 + GFF1151 0.44 +0.9
469,319 + GFF1151 0.44 -1.3
469,319 + GFF1151 0.44 -0.3
469,319 + GFF1151 0.44 +0.6
469,320 - GFF1151 0.45 +0.2
469,320 - GFF1151 0.45 +0.9
469,320 - GFF1151 0.45 -0.3
469,320 - GFF1151 0.45 -0.1
469,402 + GFF1151 0.69 +0.6
469,402 + GFF1151 0.69 +0.1
469,402 + GFF1151 0.69 +0.5
469,721 + GFF1152 0.28 +1.1
469,721 + GFF1152 0.28 -1.1
469,721 + GFF1152 0.28 -1.1
469,721 + GFF1152 0.28 -0.9
469,721 + GFF1152 0.28 -0.2
469,721 + GFF1152 0.28 -0.5
469,721 + GFF1152 0.28 +0.3
469,721 + GFF1152 0.28 -0.1
469,722 - GFF1152 0.28 +1.5
469,722 - GFF1152 0.28 -1.0
469,724 + GFF1152 0.29 +0.8
469,725 - GFF1152 0.29 +0.8
469,725 - GFF1152 0.29 -0.5
470,025 - GFF1152 0.80 -0.1
470,025 - GFF1152 0.80 -0.4
470,025 - GFF1152 0.80 -2.0
470,025 - GFF1152 0.80 +0.7
470,025 - GFF1152 0.80 -0.0
470,025 - GFF1152 0.80 +1.2
470,025 - GFF1152 0.80 +0.9
470,117 + +0.6
470,117 + +0.5
470,117 + -1.7
470,117 + -0.8
470,117 + +0.1
470,117 + +0.6
470,117 + +0.3
470,117 + -0.1
470,118 - +0.1
470,118 - +0.3
470,118 - -1.4
470,118 - -0.1
470,118 - +0.6
470,118 - -0.2
470,118 - +0.6
470,783 + GFF1154 0.36 -1.2
470,840 - GFF1154 0.46 +0.2
470,841 + GFF1154 0.46 -1.1
470,841 + GFF1154 0.46 -1.4
470,841 + GFF1154 0.46 -0.7
470,842 - GFF1154 0.46 +1.5
470,842 - GFF1154 0.46 -2.2
470,872 + GFF1154 0.51 -0.3
470,894 + GFF1154 0.55 +0.7
470,894 + GFF1154 0.55 -0.4
470,894 + GFF1154 0.55 -0.4
470,894 + GFF1154 0.55 -0.6
470,894 + GFF1154 0.55 -1.2
470,894 + GFF1154 0.55 -0.4
470,894 + GFF1154 0.55 -1.2
470,895 - GFF1154 0.55 -0.5
470,895 - GFF1154 0.55 -0.2
470,895 - GFF1154 0.55 -1.3
470,895 - GFF1154 0.55 -0.3
470,909 - GFF1154 0.58 -1.0
471,026 + GFF1154 0.78 -1.5
471,026 + GFF1154 0.78 -1.1
471,026 + GFF1154 0.78 -1.2
471,026 + GFF1154 0.78 -0.5
471,026 + GFF1154 0.78 -1.4
471,026 + GFF1154 0.78 -0.6
471,026 + GFF1154 0.78 -0.3
471,026 + GFF1154 0.78 -0.5
471,027 - GFF1154 0.79 -1.1
471,027 - GFF1154 0.79 +0.5
471,027 - GFF1154 0.79 -0.5
471,027 - GFF1154 0.79 -1.6
471,027 - GFF1154 0.79 +0.5
471,027 - GFF1154 0.79 -1.5

Or see this region's nucleotide sequence