Strain Fitness in Escherichia coli ECRC62 around BNILDI_11880

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlepA and lepB are separated by 15 nucleotideslepB and rnc are separated by 271 nucleotidesrnc and era overlap by 4 nucleotides BNILDI_11875: lepA - translation elongation factor 4, at 2,378,574 to 2,380,373 lepA BNILDI_11880: lepB - signal peptidase I, at 2,380,389 to 2,381,363 lepB BNILDI_11885: rnc - ribonuclease III, at 2,381,635 to 2,382,315 rnc BNILDI_11890: era - GTPase Era, at 2,382,312 to 2,383,217 era Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -2 -1 0 1at 2379.389 kb on + strand, within lepAat 2379.437 kb on + strand, within lepAat 2379.648 kb on + strand, within lepAat 2379.755 kb on + strand, within lepAat 2381.338 kb on + strandat 2381.461 kb on + strandat 2381.461 kb on + strandat 2381.579 kb on + strandat 2381.579 kb on + strandat 2382.002 kb on + strand, within rnc

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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2,379,389 + lepA BNILDI_11875 0.45 +0.1
2,379,437 + lepA BNILDI_11875 0.48 -0.7
2,379,648 + lepA BNILDI_11875 0.60 +0.7
2,379,755 + lepA BNILDI_11875 0.66 -0.9
2,381,338 + -1.5
2,381,461 + -1.6
2,381,461 + -1.9
2,381,579 + +1.3
2,381,579 + -1.3
2,382,002 + rnc BNILDI_11885 0.54 -0.3

Or see this region's nucleotide sequence