Strain Fitness in Escherichia coli ECRC62 around BNILDI_07625

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07620 and BNILDI_07625 overlap by 4 nucleotidesBNILDI_07625 and BNILDI_07630 are separated by 62 nucleotides BNILDI_07620: BNILDI_07620 - ATP-binding protein, at 1,521,014 to 1,523,068 _07620 BNILDI_07625: BNILDI_07625 - restriction endonuclease, at 1,523,065 to 1,524,375 _07625 BNILDI_07630: BNILDI_07630 - HNH endonuclease, at 1,524,438 to 1,525,310 _07630 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -1 0 1 2at 1522.130 kb on - strand, within BNILDI_07620at 1522.262 kb on + strand, within BNILDI_07620at 1522.490 kb on - strand, within BNILDI_07620at 1522.547 kb on - strand, within BNILDI_07620at 1522.688 kb on + strand, within BNILDI_07620at 1522.702 kb on + strand, within BNILDI_07620at 1522.703 kb on - strand, within BNILDI_07620at 1522.911 kb on - strandat 1523.273 kb on - strand, within BNILDI_07625at 1523.706 kb on - strand, within BNILDI_07625at 1523.718 kb on - strand, within BNILDI_07625at 1523.769 kb on + strand, within BNILDI_07625at 1523.812 kb on + strand, within BNILDI_07625at 1523.813 kb on - strand, within BNILDI_07625at 1523.826 kb on - strand, within BNILDI_07625at 1523.868 kb on + strand, within BNILDI_07625at 1523.960 kb on - strand, within BNILDI_07625at 1524.173 kb on - strand, within BNILDI_07625at 1524.173 kb on - strand, within BNILDI_07625at 1524.218 kb on - strand, within BNILDI_07625at 1524.268 kb on - strandat 1524.417 kb on - strandat 1524.759 kb on + strand, within BNILDI_07630at 1524.773 kb on - strand, within BNILDI_07630at 1524.776 kb on + strand, within BNILDI_07630at 1524.897 kb on + strand, within BNILDI_07630at 1524.914 kb on + strand, within BNILDI_07630at 1524.914 kb on + strand, within BNILDI_07630at 1524.949 kb on + strand, within BNILDI_07630at 1524.983 kb on - strand, within BNILDI_07630at 1525.050 kb on + strand, within BNILDI_07630at 1525.074 kb on + strand, within BNILDI_07630at 1525.075 kb on - strand, within BNILDI_07630at 1525.075 kb on - strand, within BNILDI_07630at 1525.091 kb on + strand, within BNILDI_07630at 1525.092 kb on - strand, within BNILDI_07630at 1525.134 kb on + strand, within BNILDI_07630

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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1,522,130 - BNILDI_07620 0.54 +0.0
1,522,262 + BNILDI_07620 0.61 +0.8
1,522,490 - BNILDI_07620 0.72 -1.0
1,522,547 - BNILDI_07620 0.75 -0.2
1,522,688 + BNILDI_07620 0.81 +1.4
1,522,702 + BNILDI_07620 0.82 -0.4
1,522,703 - BNILDI_07620 0.82 +0.9
1,522,911 - -0.2
1,523,273 - BNILDI_07625 0.16 -0.3
1,523,706 - BNILDI_07625 0.49 -1.7
1,523,718 - BNILDI_07625 0.50 -0.9
1,523,769 + BNILDI_07625 0.54 -1.0
1,523,812 + BNILDI_07625 0.57 -1.1
1,523,813 - BNILDI_07625 0.57 -0.8
1,523,826 - BNILDI_07625 0.58 -0.2
1,523,868 + BNILDI_07625 0.61 -0.7
1,523,960 - BNILDI_07625 0.68 -0.7
1,524,173 - BNILDI_07625 0.85 -0.9
1,524,173 - BNILDI_07625 0.85 +0.0
1,524,218 - BNILDI_07625 0.88 -0.5
1,524,268 - -0.9
1,524,417 - -0.5
1,524,759 + BNILDI_07630 0.37 +0.2
1,524,773 - BNILDI_07630 0.38 -0.3
1,524,776 + BNILDI_07630 0.39 -0.7
1,524,897 + BNILDI_07630 0.53 +2.1
1,524,914 + BNILDI_07630 0.55 +0.3
1,524,914 + BNILDI_07630 0.55 +2.2
1,524,949 + BNILDI_07630 0.59 +0.5
1,524,983 - BNILDI_07630 0.62 +0.6
1,525,050 + BNILDI_07630 0.70 -1.2
1,525,074 + BNILDI_07630 0.73 +0.0
1,525,075 - BNILDI_07630 0.73 +0.3
1,525,075 - BNILDI_07630 0.73 +0.6
1,525,091 + BNILDI_07630 0.75 +0.4
1,525,092 - BNILDI_07630 0.75 -0.5
1,525,134 + BNILDI_07630 0.80 -0.4

Or see this region's nucleotide sequence