Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rraB and yjgM are separated by 45 nucleotides yjgM and yjgN are separated by 192 nucleotides yjgN and valS are separated by 55 nucleotides
BNILDI_07430: rraB - ribonuclease E inhibitor RraB, at 1,480,605 to 1,481,021
rraB
BNILDI_07435: yjgM - Uncharacterized N-acetyltransferase YjgM, at 1,481,067 to 1,481,570
yjgM
BNILDI_07440: yjgN - Inner membrane protein YjgN, at 1,481,763 to 1,482,959
yjgN
BNILDI_07445: valS - valine--tRNA ligase, at 1,483,015 to 1,485,870
valS
Position (kb)
1481
1482
1483 Strain fitness (log2 ratio)
-1
0
1
2 at 1480.926 kb on + strand, within rraB at 1480.944 kb on + strand, within rraB at 1480.944 kb on + strand, within rraB at 1480.945 kb on - strand, within rraB at 1481.101 kb on - strand at 1481.125 kb on + strand, within yjgM at 1481.125 kb on + strand, within yjgM at 1481.133 kb on - strand, within yjgM at 1481.156 kb on - strand, within yjgM at 1481.197 kb on + strand, within yjgM at 1481.290 kb on + strand, within yjgM at 1481.291 kb on - strand, within yjgM at 1481.386 kb on + strand, within yjgM at 1481.386 kb on + strand, within yjgM at 1481.405 kb on + strand, within yjgM at 1481.408 kb on - strand, within yjgM at 1481.408 kb on - strand, within yjgM at 1481.408 kb on - strand, within yjgM at 1481.417 kb on - strand, within yjgM at 1481.449 kb on + strand, within yjgM at 1481.474 kb on - strand, within yjgM at 1481.542 kb on - strand at 1481.628 kb on - strand at 1482.097 kb on + strand, within yjgN at 1482.317 kb on - strand, within yjgN at 1482.533 kb on + strand, within yjgN at 1482.847 kb on - strand at 1482.903 kb on - strand at 1482.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 1,480,926 + rraB BNILDI_07430 0.77 +0.9 1,480,944 + rraB BNILDI_07430 0.81 -0.5 1,480,944 + rraB BNILDI_07430 0.81 +0.3 1,480,945 - rraB BNILDI_07430 0.82 -1.2 1,481,101 - -0.0 1,481,125 + yjgM BNILDI_07435 0.12 -0.2 1,481,125 + yjgM BNILDI_07435 0.12 -0.6 1,481,133 - yjgM BNILDI_07435 0.13 +0.0 1,481,156 - yjgM BNILDI_07435 0.18 +1.8 1,481,197 + yjgM BNILDI_07435 0.26 -1.3 1,481,290 + yjgM BNILDI_07435 0.44 +0.5 1,481,291 - yjgM BNILDI_07435 0.44 -0.4 1,481,386 + yjgM BNILDI_07435 0.63 -0.0 1,481,386 + yjgM BNILDI_07435 0.63 +1.8 1,481,405 + yjgM BNILDI_07435 0.67 -0.5 1,481,408 - yjgM BNILDI_07435 0.68 -0.6 1,481,408 - yjgM BNILDI_07435 0.68 -0.7 1,481,408 - yjgM BNILDI_07435 0.68 -0.6 1,481,417 - yjgM BNILDI_07435 0.69 +0.8 1,481,449 + yjgM BNILDI_07435 0.76 -0.5 1,481,474 - yjgM BNILDI_07435 0.81 +0.3 1,481,542 - -0.6 1,481,628 - -1.2 1,482,097 + yjgN BNILDI_07440 0.28 -0.8 1,482,317 - yjgN BNILDI_07440 0.46 -0.3 1,482,533 + yjgN BNILDI_07440 0.64 -1.2 1,482,847 - -0.8 1,482,903 - -0.2 1,482,935 + +0.1
Or see this region's nucleotide sequence