Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaC and ulaD are separated by 13 nucleotides ulaD and ulaE are separated by 9 nucleotides ulaE and ulaF overlap by 1 nucleotides ulaF and BNILDI_07105 are separated by 128 nucleotides
BNILDI_07085: ulaC - PTS ascorbate transporter subunit IIA, at 1,416,451 to 1,416,915
ulaC
BNILDI_07090: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 1,416,929 to 1,417,579
ulaD
BNILDI_07095: ulaE - L-ribulose-5-phosphate 3-epimerase UlaE, at 1,417,589 to 1,418,443
ulaE
BNILDI_07100: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 1,418,443 to 1,419,129
ulaF
BNILDI_07105: BNILDI_07105 - Uncharacterized protein YjfY, at 1,419,258 to 1,419,533
_07105
Position (kb) 1417
1418
1419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1416.619 kb on + strand, within ulaC at 1416.619 kb on + strand, within ulaC at 1416.913 kb on + strand at 1417.033 kb on + strand, within ulaD at 1417.150 kb on + strand, within ulaD at 1417.151 kb on - strand, within ulaD at 1417.315 kb on + strand, within ulaD at 1417.619 kb on + strand at 1417.619 kb on + strand at 1417.707 kb on + strand, within ulaE at 1417.708 kb on - strand, within ulaE at 1417.953 kb on - strand, within ulaE at 1417.953 kb on - strand, within ulaE at 1417.956 kb on - strand, within ulaE at 1418.109 kb on - strand, within ulaE at 1418.206 kb on + strand, within ulaE at 1418.217 kb on + strand, within ulaE at 1418.275 kb on - strand, within ulaE at 1418.318 kb on + strand, within ulaE at 1418.330 kb on + strand, within ulaE at 1418.331 kb on - strand, within ulaE at 1418.466 kb on - strand at 1418.686 kb on + strand, within ulaF at 1418.721 kb on + strand, within ulaF at 1418.778 kb on - strand, within ulaF at 1418.936 kb on - strand, within ulaF at 1418.936 kb on - strand, within ulaF at 1419.037 kb on - strand, within ulaF at 1419.093 kb on + strand at 1419.164 kb on + strand at 1419.164 kb on + strand at 1419.165 kb on - strand at 1419.174 kb on - strand at 1419.227 kb on + strand at 1419.228 kb on - strand at 1419.265 kb on + strand at 1419.287 kb on + strand, within BNILDI_07105 at 1419.322 kb on - strand, within BNILDI_07105 at 1419.328 kb on + strand, within BNILDI_07105 at 1419.329 kb on - strand, within BNILDI_07105 at 1419.329 kb on - strand, within BNILDI_07105 at 1419.331 kb on + strand, within BNILDI_07105 at 1419.331 kb on + strand, within BNILDI_07105 at 1419.331 kb on + strand, within BNILDI_07105 at 1419.332 kb on - strand, within BNILDI_07105 at 1419.332 kb on - strand, within BNILDI_07105 at 1419.364 kb on - strand, within BNILDI_07105 at 1419.409 kb on + strand, within BNILDI_07105
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 1,416,619 + ulaC BNILDI_07085 0.36 -1.3 1,416,619 + ulaC BNILDI_07085 0.36 -1.0 1,416,913 + +0.2 1,417,033 + ulaD BNILDI_07090 0.16 +1.0 1,417,150 + ulaD BNILDI_07090 0.34 +0.4 1,417,151 - ulaD BNILDI_07090 0.34 +0.5 1,417,315 + ulaD BNILDI_07090 0.59 -0.1 1,417,619 + +0.8 1,417,619 + -0.1 1,417,707 + ulaE BNILDI_07095 0.14 -0.1 1,417,708 - ulaE BNILDI_07095 0.14 -0.2 1,417,953 - ulaE BNILDI_07095 0.43 -1.8 1,417,953 - ulaE BNILDI_07095 0.43 -1.0 1,417,956 - ulaE BNILDI_07095 0.43 +1.8 1,418,109 - ulaE BNILDI_07095 0.61 -0.2 1,418,206 + ulaE BNILDI_07095 0.72 +0.8 1,418,217 + ulaE BNILDI_07095 0.73 +0.8 1,418,275 - ulaE BNILDI_07095 0.80 +0.3 1,418,318 + ulaE BNILDI_07095 0.85 -0.1 1,418,330 + ulaE BNILDI_07095 0.87 -0.3 1,418,331 - ulaE BNILDI_07095 0.87 -0.6 1,418,466 - +1.8 1,418,686 + ulaF BNILDI_07100 0.35 -0.4 1,418,721 + ulaF BNILDI_07100 0.40 +1.5 1,418,778 - ulaF BNILDI_07100 0.49 -1.2 1,418,936 - ulaF BNILDI_07100 0.72 -0.2 1,418,936 - ulaF BNILDI_07100 0.72 -0.1 1,419,037 - ulaF BNILDI_07100 0.86 -0.2 1,419,093 + -0.7 1,419,164 + +0.1 1,419,164 + -0.1 1,419,165 - +0.5 1,419,174 - +1.0 1,419,227 + -0.0 1,419,228 - +0.6 1,419,265 + -0.4 1,419,287 + BNILDI_07105 0.11 -0.2 1,419,322 - BNILDI_07105 0.23 +0.8 1,419,328 + BNILDI_07105 0.25 +1.0 1,419,329 - BNILDI_07105 0.26 +0.3 1,419,329 - BNILDI_07105 0.26 -0.6 1,419,331 + BNILDI_07105 0.26 -0.2 1,419,331 + BNILDI_07105 0.26 +0.6 1,419,331 + BNILDI_07105 0.26 -0.0 1,419,332 - BNILDI_07105 0.27 +0.0 1,419,332 - BNILDI_07105 0.27 -0.4 1,419,364 - BNILDI_07105 0.38 -0.6 1,419,409 + BNILDI_07105 0.55 -0.0
Or see this region's nucleotide sequence