Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpI and rsmG are separated by 616 nucleotides rsmG and mnmG are separated by 39 nucleotides
BNILDI_04595: atpI - F0F1 ATP synthase subunit I, at 909,038 to 909,418
atpI
BNILDI_04600: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 910,035 to 910,682
rsmG
BNILDI_04605: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 910,722 to 912,611
mnmG
Position (kb) 910
911 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 909.057 kb on - strand at 909.227 kb on - strand, within atpI at 909.227 kb on - strand, within atpI at 909.363 kb on - strand, within atpI at 909.465 kb on - strand at 909.569 kb on + strand at 909.569 kb on + strand at 909.635 kb on - strand at 909.639 kb on - strand at 909.679 kb on + strand at 909.680 kb on - strand at 909.704 kb on - strand at 909.707 kb on + strand at 909.707 kb on + strand at 909.739 kb on + strand at 909.889 kb on - strand at 909.918 kb on - strand at 909.964 kb on + strand at 909.964 kb on + strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.966 kb on + strand at 909.966 kb on + strand at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.287 kb on + strand, within rsmG at 910.311 kb on - strand, within rsmG at 910.323 kb on - strand, within rsmG at 910.406 kb on + strand, within rsmG at 910.451 kb on + strand, within rsmG at 910.472 kb on - strand, within rsmG at 910.499 kb on + strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.562 kb on + strand, within rsmG at 910.562 kb on + strand, within rsmG at 910.562 kb on + strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.579 kb on + strand, within rsmG at 910.586 kb on + strand, within rsmG at 910.586 kb on + strand, within rsmG at 910.619 kb on + strand at 910.619 kb on + strand at 910.638 kb on + strand at 910.743 kb on - strand at 910.743 kb on - strand at 910.842 kb on - strand at 910.961 kb on - strand, within mnmG at 910.961 kb on - strand, within mnmG at 910.969 kb on + strand, within mnmG at 910.970 kb on - strand, within mnmG at 911.352 kb on + strand, within mnmG
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 909,057 - +1.9 909,227 - atpI BNILDI_04595 0.50 -0.7 909,227 - atpI BNILDI_04595 0.50 -0.4 909,363 - atpI BNILDI_04595 0.85 -0.3 909,465 - -0.9 909,569 + -0.7 909,569 + -0.2 909,635 - -0.5 909,639 - -0.8 909,679 + -0.9 909,680 - +0.6 909,704 - -0.1 909,707 + +0.0 909,707 + -1.1 909,739 + +1.9 909,889 - -0.2 909,918 - -1.5 909,964 + -0.6 909,964 + +0.6 909,965 - -0.0 909,965 - +0.1 909,965 - -0.3 909,965 - +0.3 909,966 + -0.1 909,966 + -0.4 910,252 - rsmG BNILDI_04600 0.33 -0.2 910,252 - rsmG BNILDI_04600 0.33 +0.3 910,252 - rsmG BNILDI_04600 0.33 -1.5 910,287 + rsmG BNILDI_04600 0.39 -0.6 910,311 - rsmG BNILDI_04600 0.43 -1.1 910,323 - rsmG BNILDI_04600 0.44 -1.7 910,406 + rsmG BNILDI_04600 0.57 -2.4 910,451 + rsmG BNILDI_04600 0.64 -1.6 910,472 - rsmG BNILDI_04600 0.67 +2.9 910,499 + rsmG BNILDI_04600 0.72 +0.9 910,521 - rsmG BNILDI_04600 0.75 -0.2 910,521 - rsmG BNILDI_04600 0.75 +0.7 910,521 - rsmG BNILDI_04600 0.75 +0.1 910,562 + rsmG BNILDI_04600 0.81 -0.5 910,562 + rsmG BNILDI_04600 0.81 +0.9 910,562 + rsmG BNILDI_04600 0.81 -0.4 910,563 - rsmG BNILDI_04600 0.81 -1.5 910,563 - rsmG BNILDI_04600 0.81 -0.3 910,563 - rsmG BNILDI_04600 0.81 -0.2 910,572 - rsmG BNILDI_04600 0.83 +0.9 910,572 - rsmG BNILDI_04600 0.83 -0.2 910,572 - rsmG BNILDI_04600 0.83 +0.5 910,579 + rsmG BNILDI_04600 0.84 +0.3 910,586 + rsmG BNILDI_04600 0.85 +1.9 910,586 + rsmG BNILDI_04600 0.85 -0.7 910,619 + -1.5 910,619 + -0.1 910,638 + +0.0 910,743 - +1.1 910,743 - +1.9 910,842 - -0.1 910,961 - mnmG BNILDI_04605 0.13 -1.1 910,961 - mnmG BNILDI_04605 0.13 -0.4 910,969 + mnmG BNILDI_04605 0.13 -0.4 910,970 - mnmG BNILDI_04605 0.13 -0.7 911,352 + mnmG BNILDI_04605 0.33 -1.9
Or see this region's nucleotide sequence