Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and lfpB are separated by 24 nucleotides lfpB and lpfA-O113 are separated by 47 nucleotides lpfA-O113 and glmS are separated by 301 nucleotides
BNILDI_04525: fimD - fimbrial protein, at 894,619 to 897,141
fimD
BNILDI_04530: lfpB - fimbrial chaperone, at 897,166 to 897,897
lfpB
BNILDI_04535: lpfA-O113 - long polar fimbria major subunit LpfA-O113, at 897,945 to 898,517
lpfA-O113
BNILDI_04540: glmS - glutamine--fructose-6-phosphate transaminase (isomerizing), at 898,819 to 900,648
glmS
Position (kb) 897
898 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.170 kb on + strand, within fimD at 896.190 kb on + strand, within fimD at 896.247 kb on - strand, within fimD at 896.356 kb on - strand, within fimD at 896.357 kb on + strand, within fimD at 896.358 kb on - strand, within fimD at 896.358 kb on - strand, within fimD at 896.413 kb on - strand, within fimD at 896.425 kb on - strand, within fimD at 896.466 kb on + strand, within fimD at 896.467 kb on - strand, within fimD at 896.469 kb on + strand, within fimD at 896.469 kb on + strand, within fimD at 896.469 kb on + strand, within fimD at 896.481 kb on - strand, within fimD at 896.511 kb on + strand, within fimD at 896.511 kb on + strand, within fimD at 896.516 kb on + strand, within fimD at 896.516 kb on + strand, within fimD at 896.517 kb on - strand, within fimD at 896.517 kb on - strand, within fimD at 896.521 kb on - strand, within fimD at 896.521 kb on - strand, within fimD at 896.541 kb on + strand, within fimD at 896.595 kb on - strand, within fimD at 896.605 kb on + strand, within fimD at 896.605 kb on + strand, within fimD at 896.605 kb on + strand, within fimD at 896.606 kb on - strand, within fimD at 896.606 kb on - strand, within fimD at 896.606 kb on - strand, within fimD at 896.610 kb on + strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.611 kb on - strand, within fimD at 896.681 kb on + strand, within fimD at 896.681 kb on + strand, within fimD at 896.682 kb on - strand, within fimD at 896.706 kb on - strand, within fimD at 896.706 kb on - strand, within fimD at 896.725 kb on - strand, within fimD at 896.740 kb on - strand, within fimD at 896.967 kb on + strand at 897.058 kb on + strand at 897.059 kb on - strand at 897.144 kb on + strand at 897.144 kb on + strand at 897.145 kb on - strand at 897.167 kb on + strand at 897.210 kb on + strand at 897.211 kb on - strand at 897.213 kb on + strand at 897.213 kb on + strand at 897.214 kb on - strand at 897.246 kb on + strand, within lfpB at 897.254 kb on - strand, within lfpB at 897.288 kb on + strand, within lfpB at 897.288 kb on + strand, within lfpB at 897.336 kb on + strand, within lfpB at 897.464 kb on - strand, within lfpB at 897.519 kb on + strand, within lfpB at 897.696 kb on - strand, within lfpB at 898.072 kb on + strand, within lpfA-O113 at 898.094 kb on + strand, within lpfA-O113 at 898.106 kb on + strand, within lpfA-O113 at 898.131 kb on - strand, within lpfA-O113 at 898.270 kb on + strand, within lpfA-O113 at 898.270 kb on + strand, within lpfA-O113 at 898.271 kb on - strand, within lpfA-O113 at 898.296 kb on - strand, within lpfA-O113 at 898.325 kb on + strand, within lpfA-O113 at 898.326 kb on - strand, within lpfA-O113 at 898.330 kb on - strand, within lpfA-O113 at 898.473 kb on + strand at 898.772 kb on + strand at 898.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 896,170 + fimD BNILDI_04525 0.61 -0.9 896,190 + fimD BNILDI_04525 0.62 -0.3 896,247 - fimD BNILDI_04525 0.65 -0.5 896,356 - fimD BNILDI_04525 0.69 +1.2 896,357 + fimD BNILDI_04525 0.69 -0.1 896,358 - fimD BNILDI_04525 0.69 +1.3 896,358 - fimD BNILDI_04525 0.69 +1.1 896,413 - fimD BNILDI_04525 0.71 -1.1 896,425 - fimD BNILDI_04525 0.72 -1.0 896,466 + fimD BNILDI_04525 0.73 -0.5 896,467 - fimD BNILDI_04525 0.73 +0.0 896,469 + fimD BNILDI_04525 0.73 +1.0 896,469 + fimD BNILDI_04525 0.73 -2.4 896,469 + fimD BNILDI_04525 0.73 -0.5 896,481 - fimD BNILDI_04525 0.74 -1.1 896,511 + fimD BNILDI_04525 0.75 -0.2 896,511 + fimD BNILDI_04525 0.75 +2.2 896,516 + fimD BNILDI_04525 0.75 -1.1 896,516 + fimD BNILDI_04525 0.75 -0.8 896,517 - fimD BNILDI_04525 0.75 -0.1 896,517 - fimD BNILDI_04525 0.75 +0.3 896,521 - fimD BNILDI_04525 0.75 +0.1 896,521 - fimD BNILDI_04525 0.75 +0.5 896,541 + fimD BNILDI_04525 0.76 +0.7 896,595 - fimD BNILDI_04525 0.78 +0.3 896,605 + fimD BNILDI_04525 0.79 +0.2 896,605 + fimD BNILDI_04525 0.79 +0.7 896,605 + fimD BNILDI_04525 0.79 -0.1 896,606 - fimD BNILDI_04525 0.79 -0.2 896,606 - fimD BNILDI_04525 0.79 -0.3 896,606 - fimD BNILDI_04525 0.79 +0.0 896,610 + fimD BNILDI_04525 0.79 +0.3 896,611 - fimD BNILDI_04525 0.79 -0.7 896,611 - fimD BNILDI_04525 0.79 -1.2 896,611 - fimD BNILDI_04525 0.79 -0.1 896,611 - fimD BNILDI_04525 0.79 +0.5 896,681 + fimD BNILDI_04525 0.82 -0.4 896,681 + fimD BNILDI_04525 0.82 +0.4 896,682 - fimD BNILDI_04525 0.82 -1.5 896,706 - fimD BNILDI_04525 0.83 -0.2 896,706 - fimD BNILDI_04525 0.83 +0.0 896,725 - fimD BNILDI_04525 0.83 -0.8 896,740 - fimD BNILDI_04525 0.84 -0.7 896,967 + +0.0 897,058 + -2.7 897,059 - +0.0 897,144 + +1.2 897,144 + -0.9 897,145 - +0.9 897,167 + +0.1 897,210 + +0.3 897,211 - +0.1 897,213 + -1.3 897,213 + +0.7 897,214 - +0.8 897,246 + lfpB BNILDI_04530 0.11 +0.7 897,254 - lfpB BNILDI_04530 0.12 +0.2 897,288 + lfpB BNILDI_04530 0.17 -1.0 897,288 + lfpB BNILDI_04530 0.17 -0.9 897,336 + lfpB BNILDI_04530 0.23 +0.1 897,464 - lfpB BNILDI_04530 0.41 +0.3 897,519 + lfpB BNILDI_04530 0.48 +1.3 897,696 - lfpB BNILDI_04530 0.72 +0.0 898,072 + lpfA-O113 BNILDI_04535 0.22 +0.1 898,094 + lpfA-O113 BNILDI_04535 0.26 -1.4 898,106 + lpfA-O113 BNILDI_04535 0.28 -0.4 898,131 - lpfA-O113 BNILDI_04535 0.32 -1.2 898,270 + lpfA-O113 BNILDI_04535 0.57 -0.4 898,270 + lpfA-O113 BNILDI_04535 0.57 +0.3 898,271 - lpfA-O113 BNILDI_04535 0.57 -1.6 898,296 - lpfA-O113 BNILDI_04535 0.61 -0.5 898,325 + lpfA-O113 BNILDI_04535 0.66 -0.9 898,326 - lpfA-O113 BNILDI_04535 0.66 +0.3 898,330 - lpfA-O113 BNILDI_04535 0.67 +1.6 898,473 + +0.4 898,772 + +0.3 898,809 - -0.9
Or see this region's nucleotide sequence