Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidC and BNILDI_04405 are separated by 105 nucleotides BNILDI_04405 and tnaC are separated by 242 nucleotides tnaC and tnaA are separated by 220 nucleotides
BNILDI_04400: yidC - membrane protein insertase YidC, at 867,554 to 869,200
yidC
BNILDI_04405: BNILDI_04405 - tRNA modification GTPase MnmE, at 869,306 to 870,670
_04405
BNILDI_04410: tnaC - tryptophanase leader peptide, at 870,913 to 870,987
tnaC
BNILDI_04415: tnaA - tryptophanase, at 871,208 to 872,623
tnaA
Position (kb) 869
870
871 Strain fitness (log2 ratio) -2
-1
0
1
2 at 869.673 kb on + strand, within BNILDI_04405 at 870.003 kb on + strand, within BNILDI_04405 at 870.107 kb on - strand, within BNILDI_04405 at 870.155 kb on - strand, within BNILDI_04405 at 870.155 kb on - strand, within BNILDI_04405 at 870.155 kb on - strand, within BNILDI_04405 at 870.155 kb on - strand, within BNILDI_04405 at 870.514 kb on - strand, within BNILDI_04405 at 870.595 kb on - strand at 870.665 kb on - strand at 870.723 kb on + strand at 870.873 kb on - strand at 870.904 kb on - strand at 870.927 kb on + strand, within tnaC at 870.928 kb on - strand, within tnaC at 870.928 kb on - strand, within tnaC at 870.985 kb on + strand at 871.124 kb on + strand at 871.127 kb on - strand at 871.127 kb on - strand at 871.128 kb on + strand at 871.130 kb on + strand at 871.130 kb on + strand at 871.130 kb on + strand at 871.274 kb on - strand at 871.393 kb on + strand, within tnaA at 871.393 kb on + strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.394 kb on - strand, within tnaA at 871.446 kb on - strand, within tnaA at 871.492 kb on + strand, within tnaA at 871.532 kb on + strand, within tnaA at 871.608 kb on - strand, within tnaA at 871.660 kb on + strand, within tnaA at 871.667 kb on + strand, within tnaA at 871.667 kb on + strand, within tnaA at 871.668 kb on - strand, within tnaA at 871.668 kb on - strand, within tnaA
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 869,673 + BNILDI_04405 0.27 -0.4 870,003 + BNILDI_04405 0.51 +0.9 870,107 - BNILDI_04405 0.59 -0.7 870,155 - BNILDI_04405 0.62 +0.3 870,155 - BNILDI_04405 0.62 -1.5 870,155 - BNILDI_04405 0.62 -0.1 870,155 - BNILDI_04405 0.62 -0.9 870,514 - BNILDI_04405 0.88 +0.9 870,595 - -0.4 870,665 - -2.2 870,723 + +0.2 870,873 - -0.1 870,904 - +1.2 870,927 + tnaC BNILDI_04410 0.19 -0.0 870,928 - tnaC BNILDI_04410 0.20 -0.2 870,928 - tnaC BNILDI_04410 0.20 +0.8 870,985 + -0.4 871,124 + -0.9 871,127 - -0.4 871,127 - -0.1 871,128 + -0.5 871,130 + -1.8 871,130 + -0.9 871,130 + +0.5 871,274 - +0.1 871,393 + tnaA BNILDI_04415 0.13 -0.3 871,393 + tnaA BNILDI_04415 0.13 -0.4 871,394 - tnaA BNILDI_04415 0.13 +0.3 871,394 - tnaA BNILDI_04415 0.13 -1.1 871,394 - tnaA BNILDI_04415 0.13 +1.9 871,394 - tnaA BNILDI_04415 0.13 -1.2 871,394 - tnaA BNILDI_04415 0.13 -0.3 871,394 - tnaA BNILDI_04415 0.13 +0.1 871,394 - tnaA BNILDI_04415 0.13 +1.0 871,446 - tnaA BNILDI_04415 0.17 -0.2 871,492 + tnaA BNILDI_04415 0.20 -1.1 871,532 + tnaA BNILDI_04415 0.23 +0.6 871,608 - tnaA BNILDI_04415 0.28 -0.5 871,660 + tnaA BNILDI_04415 0.32 +0.4 871,667 + tnaA BNILDI_04415 0.32 -1.8 871,667 + tnaA BNILDI_04415 0.32 -0.7 871,668 - tnaA BNILDI_04415 0.32 -0.6 871,668 - tnaA BNILDI_04415 0.32 +0.5
Or see this region's nucleotide sequence