Experiment: Pectic galactan from potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03475 and HMPREF1181_RS03480 are separated by 2 nucleotides HMPREF1181_RS03480 and HMPREF1181_RS03485 overlap by 4 nucleotides
HMPREF1181_RS03475: HMPREF1181_RS03475 - glycoside hydrolase family 88 protein, at 878,172 to 880,700
_RS03475
HMPREF1181_RS03480: HMPREF1181_RS03480 - hypothetical protein, at 880,703 to 883,492
_RS03480
HMPREF1181_RS03485: HMPREF1181_RS03485 - hypothetical protein, at 883,489 to 885,324
_RS03485
Position (kb) 880
881
882
883
884 Strain fitness (log2 ratio) -2
-1
0
1 at 879.751 kb on - strand, within HMPREF1181_RS03475 at 879.753 kb on + strand, within HMPREF1181_RS03475 at 879.754 kb on - strand, within HMPREF1181_RS03475 at 879.759 kb on + strand, within HMPREF1181_RS03475 at 879.814 kb on - strand, within HMPREF1181_RS03475 at 879.818 kb on + strand, within HMPREF1181_RS03475 at 879.831 kb on - strand, within HMPREF1181_RS03475 at 879.898 kb on - strand, within HMPREF1181_RS03475 at 879.898 kb on - strand, within HMPREF1181_RS03475 at 879.899 kb on + strand, within HMPREF1181_RS03475 at 880.011 kb on + strand, within HMPREF1181_RS03475 at 880.011 kb on + strand, within HMPREF1181_RS03475 at 880.011 kb on + strand, within HMPREF1181_RS03475 at 880.012 kb on - strand, within HMPREF1181_RS03475 at 880.012 kb on - strand, within HMPREF1181_RS03475 at 880.012 kb on - strand, within HMPREF1181_RS03475 at 880.012 kb on - strand, within HMPREF1181_RS03475 at 880.012 kb on - strand, within HMPREF1181_RS03475 at 880.039 kb on - strand, within HMPREF1181_RS03475 at 880.109 kb on + strand, within HMPREF1181_RS03475 at 880.110 kb on - strand, within HMPREF1181_RS03475 at 880.113 kb on + strand, within HMPREF1181_RS03475 at 880.113 kb on + strand, within HMPREF1181_RS03475 at 880.113 kb on + strand, within HMPREF1181_RS03475 at 880.113 kb on + strand, within HMPREF1181_RS03475 at 880.114 kb on - strand, within HMPREF1181_RS03475 at 880.114 kb on - strand, within HMPREF1181_RS03475 at 880.218 kb on - strand, within HMPREF1181_RS03475 at 880.233 kb on - strand, within HMPREF1181_RS03475 at 880.233 kb on - strand, within HMPREF1181_RS03475 at 880.259 kb on + strand, within HMPREF1181_RS03475 at 880.260 kb on - strand, within HMPREF1181_RS03475 at 880.262 kb on - strand, within HMPREF1181_RS03475 at 880.300 kb on - strand, within HMPREF1181_RS03475 at 880.302 kb on - strand, within HMPREF1181_RS03475 at 880.421 kb on + strand, within HMPREF1181_RS03475 at 880.421 kb on + strand, within HMPREF1181_RS03475 at 880.425 kb on + strand, within HMPREF1181_RS03475 at 880.426 kb on - strand, within HMPREF1181_RS03475 at 880.426 kb on - strand, within HMPREF1181_RS03475 at 880.431 kb on + strand, within HMPREF1181_RS03475 at 880.449 kb on - strand at 880.456 kb on - strand at 880.457 kb on + strand at 880.457 kb on + strand at 880.458 kb on - strand at 880.458 kb on - strand at 880.462 kb on - strand at 880.462 kb on - strand at 880.614 kb on + strand at 880.615 kb on - strand at 880.616 kb on + strand at 880.618 kb on + strand at 880.619 kb on - strand at 880.619 kb on - strand at 880.694 kb on - strand at 880.703 kb on - strand at 880.911 kb on - strand at 880.917 kb on + strand at 880.979 kb on + strand at 880.981 kb on + strand at 881.122 kb on + strand, within HMPREF1181_RS03480 at 881.140 kb on - strand, within HMPREF1181_RS03480 at 881.235 kb on + strand, within HMPREF1181_RS03480 at 881.236 kb on - strand, within HMPREF1181_RS03480 at 881.348 kb on + strand, within HMPREF1181_RS03480 at 881.349 kb on - strand, within HMPREF1181_RS03480 at 881.447 kb on - strand, within HMPREF1181_RS03480 at 881.454 kb on - strand, within HMPREF1181_RS03480 at 881.461 kb on + strand, within HMPREF1181_RS03480 at 881.480 kb on + strand, within HMPREF1181_RS03480 at 881.481 kb on - strand, within HMPREF1181_RS03480 at 881.481 kb on - strand, within HMPREF1181_RS03480 at 881.861 kb on - strand, within HMPREF1181_RS03480 at 881.902 kb on + strand, within HMPREF1181_RS03480 at 881.902 kb on + strand, within HMPREF1181_RS03480 at 881.902 kb on + strand, within HMPREF1181_RS03480 at 882.026 kb on + strand, within HMPREF1181_RS03480 at 882.066 kb on - strand, within HMPREF1181_RS03480 at 882.070 kb on + strand, within HMPREF1181_RS03480 at 882.128 kb on + strand, within HMPREF1181_RS03480 at 882.130 kb on + strand, within HMPREF1181_RS03480 at 882.130 kb on + strand, within HMPREF1181_RS03480 at 882.131 kb on - strand, within HMPREF1181_RS03480 at 882.200 kb on + strand, within HMPREF1181_RS03480 at 882.206 kb on - strand, within HMPREF1181_RS03480 at 882.206 kb on - strand, within HMPREF1181_RS03480 at 882.245 kb on - strand, within HMPREF1181_RS03480 at 882.251 kb on - strand, within HMPREF1181_RS03480 at 882.324 kb on - strand, within HMPREF1181_RS03480 at 882.326 kb on - strand, within HMPREF1181_RS03480 at 882.396 kb on - strand, within HMPREF1181_RS03480 at 882.589 kb on + strand, within HMPREF1181_RS03480 at 882.629 kb on + strand, within HMPREF1181_RS03480 at 882.629 kb on + strand, within HMPREF1181_RS03480 at 882.637 kb on + strand, within HMPREF1181_RS03480 at 882.638 kb on - strand, within HMPREF1181_RS03480 at 882.659 kb on - strand, within HMPREF1181_RS03480 at 882.698 kb on - strand, within HMPREF1181_RS03480 at 882.729 kb on - strand, within HMPREF1181_RS03480 at 882.806 kb on + strand, within HMPREF1181_RS03480 at 882.806 kb on + strand, within HMPREF1181_RS03480 at 882.807 kb on - strand, within HMPREF1181_RS03480 at 882.808 kb on + strand, within HMPREF1181_RS03480 at 882.873 kb on - strand, within HMPREF1181_RS03480 at 882.904 kb on - strand, within HMPREF1181_RS03480 at 882.916 kb on + strand, within HMPREF1181_RS03480 at 882.917 kb on - strand, within HMPREF1181_RS03480 at 882.930 kb on + strand, within HMPREF1181_RS03480 at 882.930 kb on + strand, within HMPREF1181_RS03480 at 882.950 kb on + strand, within HMPREF1181_RS03480 at 883.028 kb on + strand, within HMPREF1181_RS03480 at 883.028 kb on + strand, within HMPREF1181_RS03480 at 883.029 kb on - strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.031 kb on - strand, within HMPREF1181_RS03480 at 883.088 kb on - strand, within HMPREF1181_RS03480 at 883.114 kb on + strand, within HMPREF1181_RS03480 at 883.114 kb on + strand, within HMPREF1181_RS03480 at 883.198 kb on - strand, within HMPREF1181_RS03480 at 883.201 kb on + strand, within HMPREF1181_RS03480 at 883.202 kb on - strand, within HMPREF1181_RS03480 at 883.228 kb on - strand at 883.283 kb on - strand at 883.283 kb on - strand at 883.407 kb on - strand at 883.407 kb on - strand at 883.440 kb on + strand at 883.441 kb on - strand at 883.450 kb on - strand at 883.454 kb on - strand at 883.456 kb on + strand at 883.474 kb on + strand at 883.541 kb on + strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.543 kb on + strand at 883.593 kb on + strand at 883.593 kb on + strand at 883.652 kb on + strand at 883.752 kb on - strand, within HMPREF1181_RS03485 at 883.933 kb on - strand, within HMPREF1181_RS03485 at 883.933 kb on - strand, within HMPREF1181_RS03485 at 884.005 kb on + strand, within HMPREF1181_RS03485 at 884.005 kb on + strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.040 kb on - strand, within HMPREF1181_RS03485 at 884.062 kb on - strand, within HMPREF1181_RS03485 at 884.077 kb on + strand, within HMPREF1181_RS03485 at 884.084 kb on + strand, within HMPREF1181_RS03485 at 884.106 kb on + strand, within HMPREF1181_RS03485 at 884.111 kb on - strand, within HMPREF1181_RS03485 at 884.123 kb on - strand, within HMPREF1181_RS03485 at 884.174 kb on + strand, within HMPREF1181_RS03485 at 884.215 kb on - strand, within HMPREF1181_RS03485 at 884.233 kb on + strand, within HMPREF1181_RS03485 at 884.416 kb on - strand, within HMPREF1181_RS03485
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 2.5 mg/ml (C) remove 879,751 - HMPREF1181_RS03475 0.62 +0.3 879,753 + HMPREF1181_RS03475 0.63 -0.5 879,754 - HMPREF1181_RS03475 0.63 +0.3 879,759 + HMPREF1181_RS03475 0.63 -2.5 879,814 - HMPREF1181_RS03475 0.65 +0.1 879,818 + HMPREF1181_RS03475 0.65 -1.0 879,831 - HMPREF1181_RS03475 0.66 -0.8 879,898 - HMPREF1181_RS03475 0.68 +0.1 879,898 - HMPREF1181_RS03475 0.68 +0.1 879,899 + HMPREF1181_RS03475 0.68 +0.2 880,011 + HMPREF1181_RS03475 0.73 -1.0 880,011 + HMPREF1181_RS03475 0.73 +0.4 880,011 + HMPREF1181_RS03475 0.73 +0.1 880,012 - HMPREF1181_RS03475 0.73 -0.5 880,012 - HMPREF1181_RS03475 0.73 +0.0 880,012 - HMPREF1181_RS03475 0.73 -0.8 880,012 - HMPREF1181_RS03475 0.73 +0.2 880,012 - HMPREF1181_RS03475 0.73 -1.1 880,039 - HMPREF1181_RS03475 0.74 -0.4 880,109 + HMPREF1181_RS03475 0.77 +0.3 880,110 - HMPREF1181_RS03475 0.77 +0.1 880,113 + HMPREF1181_RS03475 0.77 +1.1 880,113 + HMPREF1181_RS03475 0.77 -1.4 880,113 + HMPREF1181_RS03475 0.77 -2.1 880,113 + HMPREF1181_RS03475 0.77 +0.1 880,114 - HMPREF1181_RS03475 0.77 -1.0 880,114 - HMPREF1181_RS03475 0.77 -0.4 880,218 - HMPREF1181_RS03475 0.81 +0.4 880,233 - HMPREF1181_RS03475 0.81 -0.6 880,233 - HMPREF1181_RS03475 0.81 -1.1 880,259 + HMPREF1181_RS03475 0.83 -0.7 880,260 - HMPREF1181_RS03475 0.83 +0.2 880,262 - HMPREF1181_RS03475 0.83 +1.1 880,300 - HMPREF1181_RS03475 0.84 -0.3 880,302 - HMPREF1181_RS03475 0.84 -1.4 880,421 + HMPREF1181_RS03475 0.89 +0.8 880,421 + HMPREF1181_RS03475 0.89 -1.6 880,425 + HMPREF1181_RS03475 0.89 +0.7 880,426 - HMPREF1181_RS03475 0.89 +0.5 880,426 - HMPREF1181_RS03475 0.89 -0.4 880,431 + HMPREF1181_RS03475 0.89 -2.5 880,449 - -0.7 880,456 - -0.5 880,457 + +0.5 880,457 + -0.2 880,458 - -1.6 880,458 - +0.1 880,462 - +0.4 880,462 - +0.1 880,614 + -0.4 880,615 - -0.9 880,616 + -0.1 880,618 + -0.9 880,619 - +1.0 880,619 - +0.5 880,694 - -1.1 880,703 - +0.7 880,911 - +0.4 880,917 + -1.6 880,979 + -1.9 880,981 + -0.7 881,122 + HMPREF1181_RS03480 0.15 -0.8 881,140 - HMPREF1181_RS03480 0.16 -0.1 881,235 + HMPREF1181_RS03480 0.19 -1.4 881,236 - HMPREF1181_RS03480 0.19 -0.6 881,348 + HMPREF1181_RS03480 0.23 -0.6 881,349 - HMPREF1181_RS03480 0.23 -0.4 881,447 - HMPREF1181_RS03480 0.27 -0.4 881,454 - HMPREF1181_RS03480 0.27 +0.9 881,461 + HMPREF1181_RS03480 0.27 -1.0 881,480 + HMPREF1181_RS03480 0.28 +0.3 881,481 - HMPREF1181_RS03480 0.28 -0.2 881,481 - HMPREF1181_RS03480 0.28 -0.0 881,861 - HMPREF1181_RS03480 0.42 -0.9 881,902 + HMPREF1181_RS03480 0.43 -1.4 881,902 + HMPREF1181_RS03480 0.43 -0.1 881,902 + HMPREF1181_RS03480 0.43 -0.6 882,026 + HMPREF1181_RS03480 0.47 -0.9 882,066 - HMPREF1181_RS03480 0.49 -1.2 882,070 + HMPREF1181_RS03480 0.49 -0.9 882,128 + HMPREF1181_RS03480 0.51 -0.0 882,130 + HMPREF1181_RS03480 0.51 -0.1 882,130 + HMPREF1181_RS03480 0.51 -1.9 882,131 - HMPREF1181_RS03480 0.51 -0.8 882,200 + HMPREF1181_RS03480 0.54 -0.3 882,206 - HMPREF1181_RS03480 0.54 -2.0 882,206 - HMPREF1181_RS03480 0.54 -0.2 882,245 - HMPREF1181_RS03480 0.55 +0.1 882,251 - HMPREF1181_RS03480 0.55 -0.6 882,324 - HMPREF1181_RS03480 0.58 -1.3 882,326 - HMPREF1181_RS03480 0.58 -0.3 882,396 - HMPREF1181_RS03480 0.61 -0.2 882,589 + HMPREF1181_RS03480 0.68 -0.1 882,629 + HMPREF1181_RS03480 0.69 -1.5 882,629 + HMPREF1181_RS03480 0.69 -2.1 882,637 + HMPREF1181_RS03480 0.69 -0.9 882,638 - HMPREF1181_RS03480 0.69 -0.3 882,659 - HMPREF1181_RS03480 0.70 +0.7 882,698 - HMPREF1181_RS03480 0.72 -0.1 882,729 - HMPREF1181_RS03480 0.73 +0.2 882,806 + HMPREF1181_RS03480 0.75 -1.4 882,806 + HMPREF1181_RS03480 0.75 -0.6 882,807 - HMPREF1181_RS03480 0.75 -0.7 882,808 + HMPREF1181_RS03480 0.75 +0.1 882,873 - HMPREF1181_RS03480 0.78 -1.4 882,904 - HMPREF1181_RS03480 0.79 +0.7 882,916 + HMPREF1181_RS03480 0.79 +0.8 882,917 - HMPREF1181_RS03480 0.79 +0.4 882,930 + HMPREF1181_RS03480 0.80 -1.7 882,930 + HMPREF1181_RS03480 0.80 -1.1 882,950 + HMPREF1181_RS03480 0.81 +1.1 883,028 + HMPREF1181_RS03480 0.83 -0.9 883,028 + HMPREF1181_RS03480 0.83 -0.9 883,029 - HMPREF1181_RS03480 0.83 +0.5 883,030 + HMPREF1181_RS03480 0.83 -0.0 883,030 + HMPREF1181_RS03480 0.83 -1.0 883,030 + HMPREF1181_RS03480 0.83 +0.4 883,030 + HMPREF1181_RS03480 0.83 +0.4 883,031 - HMPREF1181_RS03480 0.83 -0.1 883,088 - HMPREF1181_RS03480 0.85 +0.2 883,114 + HMPREF1181_RS03480 0.86 -1.3 883,114 + HMPREF1181_RS03480 0.86 -0.8 883,198 - HMPREF1181_RS03480 0.89 +0.6 883,201 + HMPREF1181_RS03480 0.90 -0.7 883,202 - HMPREF1181_RS03480 0.90 -0.0 883,228 - +0.4 883,283 - -1.6 883,283 - -0.6 883,407 - -0.3 883,407 - -2.1 883,440 + -0.6 883,441 - -0.8 883,450 - -1.0 883,454 - -0.4 883,456 + +0.4 883,474 + -1.0 883,541 + -1.4 883,542 - -1.1 883,542 - +0.0 883,542 - -0.1 883,543 + -2.4 883,593 + +0.6 883,593 + -1.3 883,652 + -0.6 883,752 - HMPREF1181_RS03485 0.14 -0.8 883,933 - HMPREF1181_RS03485 0.24 +0.2 883,933 - HMPREF1181_RS03485 0.24 +0.5 884,005 + HMPREF1181_RS03485 0.28 +0.3 884,005 + HMPREF1181_RS03485 0.28 -0.6 884,012 - HMPREF1181_RS03485 0.28 -0.1 884,012 - HMPREF1181_RS03485 0.28 -0.1 884,012 - HMPREF1181_RS03485 0.28 -1.4 884,012 - HMPREF1181_RS03485 0.28 -0.5 884,040 - HMPREF1181_RS03485 0.30 +0.6 884,062 - HMPREF1181_RS03485 0.31 +1.0 884,077 + HMPREF1181_RS03485 0.32 -0.6 884,084 + HMPREF1181_RS03485 0.32 -1.9 884,106 + HMPREF1181_RS03485 0.34 -1.4 884,111 - HMPREF1181_RS03485 0.34 +0.4 884,123 - HMPREF1181_RS03485 0.35 -0.8 884,174 + HMPREF1181_RS03485 0.37 -0.1 884,215 - HMPREF1181_RS03485 0.40 -0.6 884,233 + HMPREF1181_RS03485 0.41 -0.0 884,416 - HMPREF1181_RS03485 0.50 +1.2
Or see this region's nucleotide sequence