Strain Fitness in Variovorax sp. SCN45 around GFF7212

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
27,828	-		GFF7211	0.46	+0.3
28,271	+		GFF7211	0.77	-0.3
28,311	+		GFF7211	0.80	+0.1
28,311	+		GFF7211	0.80	+1.7
28,376	+		GFF7211	0.84	+0.5
28,376	+		GFF7211	0.84	-1.5
28,376	+		GFF7211	0.84	+0.4
28,377	-		GFF7211	0.84	-1.2
28,377	-		GFF7211	0.84	-0.5
28,526	+				+1.5
28,544	+				-0.4
28,682	+				-0.7
28,724	-				+0.5
28,782	+				-0.1
28,782	+				-1.1
28,932	+				-0.8
28,932	+				-0.9
29,884	-		GFF7212	0.79	+0.3
30,388	-				+0.1
30,400	+				-0.4
30,401	-				-0.1
30,401	-				+0.0
30,551	-		GFF7213	0.15	-0.3
30,643	+		GFF7213	0.19	-0.5
30,913	+		GFF7213	0.30	-0.2
30,914	-		GFF7213	0.30	-0.9
30,914	-		GFF7213	0.30	-0.6