Strain Fitness in Variovorax sp. SCN45 around GFF7132

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7132 and GFF7133 are separated by 5 nucleotides GFF7132 - Xylose isomerase-like TIM-barrel protein KPN_00539, at 3 to 761 GFF7132 GFF7133 - Catalase-like heme-binding protein, at 767 to 1,852 GFF7133 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.047 kb on + strandat 0.047 kb on + strandat 0.047 kb on + strandat 0.047 kb on + strandat 0.055 kb on + strandat 0.141 kb on + strand, within GFF7132at 0.141 kb on + strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.142 kb on - strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.147 kb on + strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.148 kb on - strand, within GFF7132at 0.259 kb on - strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.300 kb on + strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.301 kb on - strand, within GFF7132at 0.351 kb on + strand, within GFF7132at 0.351 kb on + strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.352 kb on - strand, within GFF7132at 0.387 kb on + strand, within GFF7132at 0.387 kb on + strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.388 kb on - strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.396 kb on + strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.397 kb on - strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.408 kb on + strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.409 kb on - strand, within GFF7132at 0.477 kb on + strand, within GFF7132at 0.477 kb on + strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.478 kb on - strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.576 kb on + strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.577 kb on - strand, within GFF7132at 0.804 kb on + strandat 0.805 kb on - strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.822 kb on + strandat 0.823 kb on - strandat 0.823 kb on - strandat 0.823 kb on - strandat 0.823 kb on - strandat 1.197 kb on + strand, within GFF7133at 1.197 kb on + strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.198 kb on - strand, within GFF7133at 1.206 kb on + strand, within GFF7133

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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47 + -0.8
47 + -0.7
47 + -0.5
47 + -0.6
55 + +0.7
141 + GFF7132 0.18 +0.3
141 + GFF7132 0.18 -0.2
142 - GFF7132 0.18 -0.1
142 - GFF7132 0.18 +1.1
142 - GFF7132 0.18 +1.4
142 - GFF7132 0.18 -2.1
147 + GFF7132 0.19 +1.3
147 + GFF7132 0.19 +0.7
147 + GFF7132 0.19 +1.1
147 + GFF7132 0.19 +0.0
147 + GFF7132 0.19 +0.1
147 + GFF7132 0.19 -0.5
147 + GFF7132 0.19 -0.1
147 + GFF7132 0.19 +0.6
148 - GFF7132 0.19 +0.6
148 - GFF7132 0.19 +0.2
148 - GFF7132 0.19 +0.0
259 - GFF7132 0.34 -0.2
300 + GFF7132 0.39 -0.7
300 + GFF7132 0.39 +1.3
300 + GFF7132 0.39 +0.2
300 + GFF7132 0.39 +0.3
300 + GFF7132 0.39 +0.3
300 + GFF7132 0.39 -2.1
300 + GFF7132 0.39 +0.1
300 + GFF7132 0.39 -0.1
300 + GFF7132 0.39 +0.5
300 + GFF7132 0.39 +0.5
300 + GFF7132 0.39 +0.8
301 - GFF7132 0.39 +0.1
301 - GFF7132 0.39 -1.0
301 - GFF7132 0.39 -0.4
301 - GFF7132 0.39 -0.9
301 - GFF7132 0.39 +0.5
301 - GFF7132 0.39 -2.1
301 - GFF7132 0.39 +0.1
301 - GFF7132 0.39 -0.3
351 + GFF7132 0.46 +0.6
351 + GFF7132 0.46 -0.1
352 - GFF7132 0.46 -0.7
352 - GFF7132 0.46 -0.1
352 - GFF7132 0.46 -0.1
387 + GFF7132 0.51 -0.8
387 + GFF7132 0.51 -0.2
388 - GFF7132 0.51 -1.9
388 - GFF7132 0.51 +0.4
388 - GFF7132 0.51 +1.3
388 - GFF7132 0.51 -0.3
388 - GFF7132 0.51 -0.3
396 + GFF7132 0.52 -1.4
396 + GFF7132 0.52 +1.4
396 + GFF7132 0.52 -0.2
396 + GFF7132 0.52 +0.3
396 + GFF7132 0.52 -0.7
396 + GFF7132 0.52 -0.7
396 + GFF7132 0.52 -0.3
397 - GFF7132 0.52 -0.7
397 - GFF7132 0.52 +0.3
397 - GFF7132 0.52 -0.2
397 - GFF7132 0.52 -0.2
397 - GFF7132 0.52 -0.5
397 - GFF7132 0.52 -0.4
408 + GFF7132 0.53 +1.5
408 + GFF7132 0.53 +0.8
408 + GFF7132 0.53 -0.6
408 + GFF7132 0.53 +0.3
409 - GFF7132 0.53 -1.5
409 - GFF7132 0.53 -1.5
409 - GFF7132 0.53 +1.2
409 - GFF7132 0.53 +0.1
477 + GFF7132 0.62 -1.3
477 + GFF7132 0.62 -0.4
478 - GFF7132 0.63 -0.5
478 - GFF7132 0.63 +0.3
478 - GFF7132 0.63 -0.3
478 - GFF7132 0.63 +0.3
576 + GFF7132 0.75 -0.5
576 + GFF7132 0.75 +0.6
576 + GFF7132 0.75 +0.7
577 - GFF7132 0.76 -0.1
577 - GFF7132 0.76 +0.3
577 - GFF7132 0.76 -0.5
804 + -0.7
805 - +0.3
822 + -1.3
822 + +0.9
822 + +1.4
822 + -0.3
822 + -0.1
822 + +1.0
822 + -0.6
822 + -0.3
822 + +0.8
823 - -0.1
823 - -0.6
823 - +0.5
823 - -0.1
1,197 + GFF7133 0.40 -0.3
1,197 + GFF7133 0.40 +0.1
1,198 - GFF7133 0.40 -0.9
1,198 - GFF7133 0.40 -0.4
1,198 - GFF7133 0.40 +0.1
1,198 - GFF7133 0.40 +1.3
1,198 - GFF7133 0.40 -0.6
1,198 - GFF7133 0.40 +0.9
1,198 - GFF7133 0.40 -3.6
1,198 - GFF7133 0.40 +0.2
1,206 + GFF7133 0.40 +0.2

Or see this region's nucleotide sequence