Strain Fitness in Variovorax sp. SCN45 around GFF7121

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7120 and GFF7121 are separated by 15 nucleotidesGFF7121 and GFF7122 are separated by 176 nucleotides GFF7120 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 37,662 to 38,906 GFF7120 GFF7121 - CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 38,922 to 39,911 GFF7121 GFF7122 - no description, at 40,088 to 40,999 GFF7122 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 38.092 kb on - strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.569 kb on + strand, within GFF7120at 38.569 kb on + strand, within GFF7120at 38.570 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120at 38.668 kb on + strand, within GFF7120at 38.668 kb on + strand, within GFF7120at 38.668 kb on + strand, within GFF7120at 38.668 kb on + strand, within GFF7120at 38.668 kb on + strand, within GFF7120at 38.669 kb on - strand, within GFF7120at 38.669 kb on - strand, within GFF7120at 38.669 kb on - strand, within GFF7120at 38.669 kb on - strand, within GFF7120at 38.669 kb on - strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.770 kb on + strand, within GFF7120at 38.771 kb on - strand, within GFF7120at 38.771 kb on - strand, within GFF7120at 38.771 kb on - strand, within GFF7120at 38.774 kb on + strand, within GFF7120at 38.793 kb on + strandat 38.794 kb on - strandat 38.794 kb on - strandat 38.815 kb on + strandat 38.847 kb on + strandat 38.847 kb on + strandat 38.847 kb on + strandat 38.848 kb on - strandat 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.034 kb on + strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.035 kb on - strand, within GFF7121at 39.190 kb on + strand, within GFF7121at 39.190 kb on + strand, within GFF7121at 39.190 kb on + strand, within GFF7121at 39.191 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.221 kb on - strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.340 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.523 kb on + strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.524 kb on - strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.567 kb on + strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.568 kb on - strand, within GFF7121at 39.799 kb on + strand, within GFF7121at 39.800 kb on - strand, within GFF7121at 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.933 kb on + strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.934 kb on - strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.963 kb on + strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.964 kb on - strandat 39.967 kb on + strandat 40.022 kb on - strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.046 kb on + strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.047 kb on - strandat 40.195 kb on - strand, within GFF7122at 40.277 kb on + strand, within GFF7122at 40.340 kb on + strand, within GFF7122at 40.361 kb on + strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.362 kb on - strand, within GFF7122at 40.388 kb on - strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.517 kb on + strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.518 kb on - strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.700 kb on + strand, within GFF7122at 40.701 kb on - strand, within GFF7122

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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38,092 - GFF7120 0.35 -0.5
38,119 + GFF7120 0.37 +0.2
38,119 + GFF7120 0.37 -1.3
38,119 + GFF7120 0.37 -1.8
38,119 + GFF7120 0.37 -0.1
38,120 - GFF7120 0.37 -0.5
38,120 - GFF7120 0.37 +0.1
38,120 - GFF7120 0.37 -0.3
38,269 + GFF7120 0.49 -1.5
38,269 + GFF7120 0.49 +0.5
38,269 + GFF7120 0.49 -0.2
38,269 + GFF7120 0.49 -1.0
38,269 + GFF7120 0.49 +0.6
38,270 - GFF7120 0.49 -0.8
38,270 - GFF7120 0.49 -0.9
38,270 - GFF7120 0.49 +0.7
38,270 - GFF7120 0.49 +0.9
38,270 - GFF7120 0.49 -0.5
38,270 - GFF7120 0.49 -0.2
38,270 - GFF7120 0.49 +0.1
38,294 - GFF7120 0.51 -0.7
38,294 - GFF7120 0.51 -0.1
38,294 - GFF7120 0.51 +0.4
38,294 - GFF7120 0.51 +0.3
38,395 + GFF7120 0.59 +0.3
38,395 + GFF7120 0.59 +1.4
38,395 + GFF7120 0.59 +0.4
38,396 - GFF7120 0.59 +0.6
38,396 - GFF7120 0.59 +1.3
38,396 - GFF7120 0.59 -0.0
38,396 - GFF7120 0.59 -0.2
38,396 - GFF7120 0.59 -0.8
38,396 - GFF7120 0.59 -0.5
38,396 - GFF7120 0.59 -1.9
38,396 - GFF7120 0.59 +0.1
38,440 - GFF7120 0.62 +0.2
38,440 - GFF7120 0.62 +0.4
38,440 - GFF7120 0.62 +0.4
38,569 + GFF7120 0.73 -1.5
38,569 + GFF7120 0.73 +0.3
38,570 - GFF7120 0.73 +0.2
38,585 - GFF7120 0.74 -0.3
38,585 - GFF7120 0.74 -0.7
38,585 - GFF7120 0.74 -0.2
38,668 + GFF7120 0.81 +0.0
38,668 + GFF7120 0.81 +1.4
38,668 + GFF7120 0.81 -1.1
38,668 + GFF7120 0.81 +0.4
38,668 + GFF7120 0.81 +1.5
38,669 - GFF7120 0.81 -0.1
38,669 - GFF7120 0.81 +0.1
38,669 - GFF7120 0.81 -1.0
38,669 - GFF7120 0.81 -0.6
38,669 - GFF7120 0.81 +1.4
38,770 + GFF7120 0.89 +0.2
38,770 + GFF7120 0.89 -0.8
38,770 + GFF7120 0.89 +0.5
38,770 + GFF7120 0.89 -0.2
38,770 + GFF7120 0.89 +0.9
38,770 + GFF7120 0.89 +0.1
38,770 + GFF7120 0.89 +0.3
38,770 + GFF7120 0.89 -0.3
38,770 + GFF7120 0.89 -0.6
38,770 + GFF7120 0.89 -0.8
38,770 + GFF7120 0.89 -0.2
38,771 - GFF7120 0.89 -1.4
38,771 - GFF7120 0.89 -1.3
38,771 - GFF7120 0.89 +0.3
38,774 + GFF7120 0.89 -0.5
38,793 + -0.1
38,794 - +0.9
38,794 - +0.7
38,815 + +2.9
38,847 + +0.6
38,847 + -0.0
38,847 + +0.5
38,848 - -0.2
39,034 + GFF7121 0.11 -0.6
39,034 + GFF7121 0.11 +0.5
39,034 + GFF7121 0.11 -0.7
39,034 + GFF7121 0.11 -0.5
39,034 + GFF7121 0.11 +0.0
39,034 + GFF7121 0.11 -0.6
39,034 + GFF7121 0.11 -0.6
39,034 + GFF7121 0.11 +1.9
39,034 + GFF7121 0.11 -0.1
39,034 + GFF7121 0.11 -0.5
39,035 - GFF7121 0.11 +1.6
39,035 - GFF7121 0.11 -1.1
39,035 - GFF7121 0.11 +0.6
39,035 - GFF7121 0.11 +0.5
39,035 - GFF7121 0.11 -3.1
39,035 - GFF7121 0.11 -0.2
39,035 - GFF7121 0.11 -1.1
39,190 + GFF7121 0.27 +1.1
39,190 + GFF7121 0.27 -0.5
39,190 + GFF7121 0.27 -0.1
39,191 - GFF7121 0.27 -1.1
39,221 - GFF7121 0.30 +1.1
39,221 - GFF7121 0.30 -1.7
39,221 - GFF7121 0.30 -0.1
39,221 - GFF7121 0.30 -0.1
39,221 - GFF7121 0.30 +1.2
39,340 + GFF7121 0.42 -0.6
39,340 + GFF7121 0.42 -0.5
39,340 + GFF7121 0.42 -0.5
39,523 + GFF7121 0.61 -0.5
39,523 + GFF7121 0.61 +0.9
39,523 + GFF7121 0.61 +1.2
39,523 + GFF7121 0.61 -0.7
39,523 + GFF7121 0.61 -0.4
39,523 + GFF7121 0.61 +0.3
39,524 - GFF7121 0.61 -0.1
39,524 - GFF7121 0.61 +1.5
39,524 - GFF7121 0.61 +1.3
39,524 - GFF7121 0.61 -0.0
39,524 - GFF7121 0.61 -0.9
39,524 - GFF7121 0.61 -2.0
39,567 + GFF7121 0.65 +0.3
39,567 + GFF7121 0.65 -0.0
39,567 + GFF7121 0.65 -1.2
39,567 + GFF7121 0.65 -1.2
39,568 - GFF7121 0.65 -0.8
39,568 - GFF7121 0.65 -0.8
39,568 - GFF7121 0.65 +1.5
39,568 - GFF7121 0.65 +0.1
39,568 - GFF7121 0.65 +0.1
39,568 - GFF7121 0.65 +0.5
39,799 + GFF7121 0.89 -1.1
39,800 - GFF7121 0.89 -0.1
39,933 + -0.1
39,933 + -0.9
39,933 + -0.8
39,933 + -0.2
39,933 + +1.0
39,933 + -0.5
39,934 - -1.4
39,934 - -0.3
39,934 - -0.5
39,934 - +0.2
39,934 - -2.0
39,934 - +0.3
39,934 - +0.4
39,963 + -0.8
39,963 + +0.0
39,963 + -0.6
39,963 + -0.1
39,963 + +0.0
39,963 + -0.6
39,964 - -1.6
39,964 - +1.5
39,964 - +0.2
39,964 - -0.5
39,964 - -0.5
39,964 - -0.4
39,964 - +0.5
39,967 + +0.1
40,022 - +0.7
40,046 + +0.1
40,046 + +0.6
40,046 + -0.6
40,046 + +0.7
40,046 + +0.5
40,047 - -0.5
40,047 - -0.8
40,047 - +0.1
40,047 - -0.6
40,195 - GFF7122 0.12 +0.0
40,277 + GFF7122 0.21 -0.5
40,340 + GFF7122 0.28 -0.5
40,361 + GFF7122 0.30 +1.0
40,362 - GFF7122 0.30 -0.6
40,362 - GFF7122 0.30 -0.5
40,362 - GFF7122 0.30 -0.4
40,362 - GFF7122 0.30 -0.7
40,388 - GFF7122 0.33 +0.3
40,517 + GFF7122 0.47 -0.8
40,517 + GFF7122 0.47 -0.1
40,517 + GFF7122 0.47 -2.5
40,517 + GFF7122 0.47 -0.2
40,517 + GFF7122 0.47 +0.2
40,518 - GFF7122 0.47 -0.0
40,518 - GFF7122 0.47 +0.4
40,518 - GFF7122 0.47 +0.9
40,518 - GFF7122 0.47 -0.5
40,518 - GFF7122 0.47 -0.8
40,518 - GFF7122 0.47 -0.2
40,518 - GFF7122 0.47 -0.3
40,700 + GFF7122 0.67 -0.4
40,700 + GFF7122 0.67 -0.6
40,700 + GFF7122 0.67 +0.7
40,700 + GFF7122 0.67 +0.9
40,701 - GFF7122 0.67 +0.3

Or see this region's nucleotide sequence