Strain Fitness in Variovorax sp. SCN45 around GFF7031

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
47,153	+		GFF7030	0.49	-0.5
47,153	+		GFF7030	0.49	-1.3
47,154	-		GFF7030	0.49	+0.8
47,154	-		GFF7030	0.49	-1.3
47,154	-		GFF7030	0.49	+1.1
47,227	+		GFF7030	0.53	-0.5
47,249	+		GFF7030	0.54	-0.2
47,249	+		GFF7030	0.54	+0.2
47,249	+		GFF7030	0.54	+0.3
47,250	-		GFF7030	0.54	-0.7
47,250	-		GFF7030	0.54	-0.0
47,250	-		GFF7030	0.54	+0.7
47,288	-		GFF7030	0.56	-0.6
47,288	-		GFF7030	0.56	-0.5
47,288	-		GFF7030	0.56	-0.9
47,348	-		GFF7030	0.60	+0.3
47,390	+		GFF7030	0.62	+1.0
47,391	-		GFF7030	0.62	+0.2
47,408	-		GFF7030	0.63	-0.2
47,414	-		GFF7030	0.63	-0.5
47,414	-		GFF7030	0.63	+0.9
47,415	+		GFF7030	0.63	-1.0
47,415	+		GFF7030	0.63	-0.7
47,415	+		GFF7030	0.63	-0.2
47,415	+		GFF7030	0.63	+0.0
47,416	-		GFF7030	0.63	+0.5
47,565	-		GFF7030	0.71	-0.5
47,565	-		GFF7030	0.71	-0.6
47,565	-		GFF7030	0.71	-0.7
47,565	-		GFF7030	0.71	-0.5
47,642	+		GFF7030	0.75	+1.0
47,643	-		GFF7030	0.75	+0.0
47,643	-		GFF7030	0.75	-1.1
47,658	+		GFF7030	0.76	-0.5
47,658	+		GFF7030	0.76	-0.1
47,659	-		GFF7030	0.76	+0.4
47,659	-		GFF7030	0.76	-0.4
47,659	-		GFF7030	0.76	-0.6
47,716	+		GFF7030	0.79	+0.9
47,717	-		GFF7030	0.79	+0.0
47,749	+		GFF7030	0.81	+1.7
47,749	+		GFF7030	0.81	-0.4
47,749	+		GFF7030	0.81	-0.2
47,749	+		GFF7030	0.81	+0.2
47,749	+		GFF7030	0.81	-0.1
47,749	+		GFF7030	0.81	-1.4
47,749	+		GFF7030	0.81	-0.4
47,750	-		GFF7030	0.81	-1.4
47,750	-		GFF7030	0.81	-0.0
47,782	-		GFF7030	0.83	-0.6
47,782	-		GFF7030	0.83	-0.4
47,782	-		GFF7030	0.83	+0.7
47,868	+		GFF7030	0.87	-1.1
47,868	+		GFF7030	0.87	+0.1
47,868	+		GFF7030	0.87	-0.1
47,868	+		GFF7030	0.87	-0.0
47,868	+		GFF7030	0.87	-0.4
47,868	+		GFF7030	0.87	-1.0
47,868	+		GFF7030	0.87	+0.2
47,868	+		GFF7030	0.87	+0.0
47,868	+		GFF7030	0.87	+0.7
47,868	+		GFF7030	0.87	-0.8
47,868	+		GFF7030	0.87	+0.7
47,868	+		GFF7030	0.87	-0.8
47,868	+		GFF7030	0.87	+1.0
47,868	+		GFF7030	0.87	+0.0
47,868	+		GFF7030	0.87	-0.3
47,868	+		GFF7030	0.87	-0.6
47,868	+		GFF7030	0.87	+0.1
47,868	+		GFF7030	0.87	+0.5
47,868	+		GFF7030	0.87	+0.2
47,868	+		GFF7030	0.87	-0.3
47,868	+		GFF7030	0.87	+0.1
47,868	+		GFF7030	0.87	-0.4
47,868	+		GFF7030	0.87	-0.6
47,868	+		GFF7030	0.87	+0.7
47,868	+		GFF7030	0.87	+1.1
47,868	+		GFF7030	0.87	-0.6
47,868	+		GFF7030	0.87	+0.2
47,868	+		GFF7030	0.87	+0.6
47,869	-		GFF7030	0.87	+1.7
47,869	-		GFF7030	0.87	-0.5
47,869	-		GFF7030	0.87	-0.4
47,869	-		GFF7030	0.87	-0.3
47,869	-		GFF7030	0.87	-0.0
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	+0.2
47,869	-		GFF7030	0.87	-0.7
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	-0.4
47,869	-		GFF7030	0.87	+0.1
47,869	-		GFF7030	0.87	-1.4
47,869	-		GFF7030	0.87	+0.1
47,869	-		GFF7030	0.87	+2.1
47,869	-		GFF7030	0.87	-2.4
47,904	+		GFF7030	0.89	+0.8
47,904	+		GFF7030	0.89	-0.0
47,904	+		GFF7030	0.89	+0.0
47,904	+		GFF7030	0.89	-0.1
47,905	-		GFF7030	0.89	-0.8
47,905	-		GFF7030	0.89	+0.7
47,905	-		GFF7030	0.89	+0.0
47,905	-		GFF7030	0.89	-0.3
47,905	-		GFF7030	0.89	-0.4
47,931	+				-1.4
47,931	+				-0.4
47,931	+				+0.3
47,931	+				-0.2
47,931	+				-0.4
47,931	+				-0.1
47,931	+				+0.5
47,931	+				-0.4
47,932	-				-1.1
47,932	-				-0.4
47,932	-				-1.2
47,932	-				+0.3
47,934	+				+0.2
47,934	+				+0.9
47,934	+				-1.0
47,934	+				-0.6
47,934	+				+1.0
47,935	-				-0.0
47,935	-				-0.7
47,935	-				-0.6
47,935	-				-0.7
47,935	-				-0.8
47,935	-				+0.5
47,956	+				+0.5
47,956	+				+1.3
47,956	+				-0.9
47,956	+				-0.7
47,956	+				+0.2
47,956	+				-2.0
47,956	+				+0.2
47,956	+				+0.1
47,957	-				-1.9
47,957	-				-0.3
47,957	-				-0.3
47,957	-				-0.1
47,957	-				+0.5
47,957	-				-2.7
47,957	-				-0.3
47,957	-				-0.8
47,957	-				+1.2
47,957	-				-0.4
47,957	-				+0.1
47,958	+				-0.0
47,958	+				-0.9
47,958	+				+1.5
47,958	+				+0.0
47,958	+				-0.0
47,959	-				+0.1
47,959	-				-0.0
47,959	-				-0.4
47,959	-				+0.6
47,959	-				-1.0
47,959	-				+1.0
47,959	-				+0.4
47,959	-				-0.3
47,959	-				+3.7
47,959	-				-0.4
47,959	-				+1.2
47,959	-				+0.4
47,959	-				-1.0
47,960	+				-1.1
47,960	+				+0.4
47,960	+				-0.1
47,960	+				-0.5
47,960	+				+0.8
47,960	+				-0.4
47,960	+				+0.8
47,960	+				+0.4
47,960	+				+0.2
47,960	+				-0.0
47,960	+				-0.8
47,960	+				-0.4
47,960	+				+0.4
47,960	+				+0.7
47,960	+				+0.4
47,960	+				-0.4
47,960	+				-0.1
47,960	+				-1.0
47,960	+				-1.1
47,960	+				+0.3
47,961	-				+0.0
47,961	-				+0.2
47,961	-				+0.1
47,961	-				+0.2
47,961	-				-1.4
47,961	-				+0.1
47,961	-				-2.1
47,961	-				-0.2
47,961	-				+0.4
47,961	-				-0.0
47,961	-				-0.3
47,961	-				+1.3
47,961	-				-0.0
47,962	+				+0.1
47,962	+				-0.5
47,962	+				+0.7
47,962	+				-0.1
47,962	+				+0.3
47,962	+				-0.9
47,962	+				+0.0
47,962	+				+1.0
47,962	+				-0.0
47,962	+				-0.2
47,962	+				-0.3
47,962	+				-0.0
47,962	+				+0.5
47,963	-				-0.9
47,963	-				+0.4
47,963	-				+0.3
47,963	-				+0.4
47,963	-				-0.2
47,963	-				-0.5
47,963	-				-0.7
47,963	-				-0.5
47,963	-				-1.1
47,963	-				+0.1
47,963	-				-0.1
47,963	-				+0.1
47,963	-				-0.1
47,963	-				+2.7
47,963	-				-0.1
47,963	-				+0.4
47,963	-				+0.3
47,963	-				-1.0
47,963	-				+0.4
47,963	-				+0.9
47,963	-				-0.5
47,963	-				-0.9
47,963	-				-0.6
48,011	+				-0.3
48,012	-				+0.4
48,012	-				-0.1
48,106	-				+0.1
48,144	+				+0.4
48,144	+				+0.3
48,144	+				-0.2
48,145	-				+0.5
48,145	-				-0.2
48,145	-				-0.7
48,145	-				-2.2
48,185	-				-0.1
48,185	-				+0.1
48,202	+				-0.5
48,203	-				+1.5
48,203	-				+0.3
48,203	-				+0.4
48,316	+				-0.6
48,316	+				+0.1
48,317	-				+0.5
48,317	-				+0.1
48,317	-				-0.2
48,317	-				+0.4
48,321	-				-0.4
48,367	+		GFF7031	0.12	-0.5
48,367	+		GFF7031	0.12	-0.9
48,367	+		GFF7031	0.12	+0.5
48,427	-		GFF7031	0.15	-0.6
48,438	+		GFF7031	0.15	-0.5
48,466	-		GFF7031	0.17	+0.5
48,466	-		GFF7031	0.17	-1.1
48,516	-		GFF7031	0.19	-1.6
48,575	+		GFF7031	0.22	+0.7
48,588	+		GFF7031	0.22	-0.3
48,588	+		GFF7031	0.22	-0.1
48,589	-		GFF7031	0.22	+0.7
48,685	+		GFF7031	0.27	-0.8
48,685	+		GFF7031	0.27	+0.1
48,685	+		GFF7031	0.27	+0.1
48,700	+		GFF7031	0.27	-0.3
48,700	+		GFF7031	0.27	+0.4
48,700	+		GFF7031	0.27	+1.0
48,757	+		GFF7031	0.30	-1.0
48,757	+		GFF7031	0.30	-0.9
48,854	+		GFF7031	0.35	-0.3
48,857	-		GFF7031	0.35	-0.4
48,919	-		GFF7031	0.38	+0.6
48,944	-		GFF7031	0.39	+0.1
48,956	-		GFF7031	0.39	-0.3
48,996	+		GFF7031	0.41	-0.6
48,996	+		GFF7031	0.41	-1.9
48,997	-		GFF7031	0.41	-2.5
48,997	-		GFF7031	0.41	-1.4
49,059	+		GFF7031	0.44	-1.1
49,060	-		GFF7031	0.44	-0.8
49,060	-		GFF7031	0.44	-0.9
49,060	-		GFF7031	0.44	+0.3
49,092	+		GFF7031	0.46	-1.2
49,092	+		GFF7031	0.46	-0.1
49,139	-		GFF7031	0.48	-0.8
49,150	-		GFF7031	0.48	-0.0
49,179	+		GFF7031	0.50	-0.2
49,236	+		GFF7031	0.52	-0.3
49,241	-		GFF7031	0.53	-0.7
49,246	+		GFF7031	0.53	+0.4
49,282	-		GFF7031	0.54	-0.1
49,297	-		GFF7031	0.55	-0.1
49,323	+		GFF7031	0.56	+1.7
49,323	+		GFF7031	0.56	+0.6
49,352	+		GFF7031	0.58	+0.2
49,353	-		GFF7031	0.58	-0.8
49,490	-		GFF7031	0.64	-0.5
49,490	-		GFF7031	0.64	+0.6
49,492	+		GFF7031	0.64	-0.1
49,518	+		GFF7031	0.65	-0.1
49,606	-		GFF7031	0.69	-0.3
49,622	-		GFF7031	0.70	+0.2
49,664	-		GFF7031	0.72	-0.1
49,710	-		GFF7031	0.74	+0.1
49,710	-		GFF7031	0.74	-0.7
49,710	-		GFF7031	0.74	-0.3
49,729	-		GFF7031	0.75	-0.4
49,730	+		GFF7031	0.75	+0.0
49,731	-		GFF7031	0.75	-0.0
49,744	-		GFF7031	0.76	-1.0
49,752	+		GFF7031	0.76	-1.3
49,753	-		GFF7031	0.76	-0.3
49,805	-		GFF7031	0.79	-0.9
49,810	+		GFF7031	0.79	-1.0
49,846	+		GFF7031	0.81	-0.6
50,121	-				-0.2
50,121	-				+0.2
50,125	-				-0.3
50,129	+				-0.1
50,130	-				-1.2
50,283	+				+0.1
50,451	-				-0.0
50,522	+				+0.4
50,523	-				+1.3
50,523	-				+0.4
50,559	-				-0.4
50,564	+				-0.8
50,574	-				+0.5
50,606	+				-0.4
50,806	+				+0.3
50,806	+				+0.1
50,806	+				-0.1
50,806	+				-0.5
50,807	-				-0.4
50,807	-				-2.9
50,825	-				-0.6
50,825	-				-0.6
50,846	-				+0.3
50,858	+				+0.3
50,858	+				-0.8
50,858	+				-0.9
50,858	+				+0.1
50,858	+				+0.3
50,859	-				-1.6
50,859	-				+0.3
50,859	-				-0.4
50,859	-				+1.7
50,866	+				-0.1
50,867	-				-0.7
51,002	-				-0.3
51,039	+				-0.6
51,040	-				+0.5
51,047	+				+0.5
51,047	+				+0.1
51,047	+				-1.0
51,047	+				-0.6
51,048	-				+0.0
51,048	-				-0.2
51,048	-				+0.1
51,048	-				+0.4
51,152	+				+0.1
51,152	+				-0.2
51,152	+				+0.7
51,152	+				-1.3
51,153	-				+0.0
51,153	-				-0.3
51,153	-				+0.5
51,153	-				+0.5
51,153	-				-1.7
51,153	-				+0.1
51,153	-				+0.1
51,161	+				+0.6
51,161	+				-0.9
51,161	+				-2.3
51,162	-				+0.7
51,162	-				+0.0
51,162	-				-0.7
51,180	+				+0.1
51,180	+				-0.4
51,180	+				-0.2
51,181	-				+0.5
51,181	-				+0.9
51,181	-				+0.9
51,181	-				+1.4
51,181	-				+0.1
51,181	-				-1.4
51,184	+				-0.1
51,184	+				+0.1
51,184	+				+1.0
51,184	+				-0.6
51,184	+				-0.3
51,184	+				-0.9
51,184	+				+0.2
51,185	-				+1.0
51,185	-				+1.2
51,185	-				-0.3
51,185	-				-0.1
51,185	-				+2.7
51,185	-				-0.7
51,185	-				+0.6
51,185	-				+0.3
51,185	-				+0.9
51,185	-				-0.1
51,250	+				+0.5
51,250	+				+1.0
51,251	-				+0.2
51,251	-				-1.3
51,251	-				-1.0