Strain Fitness in Variovorax sp. SCN45 around GFF6918

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6917 and GFF6918 are separated by 160 nucleotidesGFF6918 and GFF6919 are separated by 151 nucleotides GFF6917 - Uncharacterized MFS-type transporter, at 53,646 to 54,986 GFF6917 GFF6918 - Transcriptional regulator, AraC family, at 55,147 to 56,130 GFF6918 GFF6919 - NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2), at 56,282 to 56,344 GFF6919 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.244 kb on - strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.441 kb on + strand, within GFF6917at 54.442 kb on - strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.456 kb on + strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.457 kb on - strand, within GFF6917at 54.711 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.720 kb on + strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.721 kb on - strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.795 kb on + strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 54.796 kb on - strand, within GFF6917at 55.102 kb on + strandat 55.142 kb on + strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.143 kb on - strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.225 kb on + strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.226 kb on - strandat 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.288 kb on + strand, within GFF6918at 55.289 kb on - strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.384 kb on + strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.385 kb on - strand, within GFF6918at 55.471 kb on + strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.472 kb on - strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.615 kb on + strand, within GFF6918at 55.616 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918at 55.874 kb on - strand, within GFF6918at 56.128 kb on + strandat 56.128 kb on + strandat 56.128 kb on + strandat 56.128 kb on + strandat 56.129 kb on - strandat 56.129 kb on - strandat 56.129 kb on - strandat 56.129 kb on - strandat 56.129 kb on - strandat 56.159 kb on + strandat 56.159 kb on + strandat 56.161 kb on + strandat 56.161 kb on + strandat 56.162 kb on - strandat 56.162 kb on - strandat 56.162 kb on - strandat 56.162 kb on - strandat 56.162 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.239 kb on + strandat 56.239 kb on + strandat 56.239 kb on + strandat 56.239 kb on + strandat 56.239 kb on + strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.240 kb on - strandat 56.282 kb on - strandat 56.282 kb on - strandat 56.290 kb on - strand, within GFF6919at 56.290 kb on - strand, within GFF6919

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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54,244 - GFF6917 0.45 -1.3
54,244 - GFF6917 0.45 +0.6
54,244 - GFF6917 0.45 -0.3
54,441 + GFF6917 0.59 -0.8
54,441 + GFF6917 0.59 -0.0
54,441 + GFF6917 0.59 -0.5
54,442 - GFF6917 0.59 -0.7
54,456 + GFF6917 0.60 -0.1
54,456 + GFF6917 0.60 -0.2
54,456 + GFF6917 0.60 -1.4
54,457 - GFF6917 0.60 +0.4
54,457 - GFF6917 0.60 +0.2
54,711 + GFF6917 0.79 -0.1
54,720 + GFF6917 0.80 -0.3
54,720 + GFF6917 0.80 -1.0
54,720 + GFF6917 0.80 -0.8
54,721 - GFF6917 0.80 +0.2
54,721 - GFF6917 0.80 -0.1
54,721 - GFF6917 0.80 -0.8
54,795 + GFF6917 0.86 -0.5
54,795 + GFF6917 0.86 +0.4
54,796 - GFF6917 0.86 +1.2
54,796 - GFF6917 0.86 -0.2
55,102 + +0.5
55,142 + -2.7
55,143 - -1.9
55,143 - -0.5
55,143 - -0.1
55,225 + -1.8
55,225 + +0.4
55,225 + -2.1
55,225 + +0.5
55,225 + -0.1
55,225 + -0.4
55,226 - +0.0
55,226 - +0.5
55,226 - +0.2
55,288 + GFF6918 0.14 -2.4
55,288 + GFF6918 0.14 -0.8
55,288 + GFF6918 0.14 -0.8
55,289 - GFF6918 0.14 -0.4
55,384 + GFF6918 0.24 -0.2
55,384 + GFF6918 0.24 -0.5
55,384 + GFF6918 0.24 -0.1
55,384 + GFF6918 0.24 -1.2
55,385 - GFF6918 0.24 +0.7
55,385 - GFF6918 0.24 +0.6
55,385 - GFF6918 0.24 -0.6
55,385 - GFF6918 0.24 +0.5
55,471 + GFF6918 0.33 -0.6
55,472 - GFF6918 0.33 +0.7
55,472 - GFF6918 0.33 -0.6
55,615 + GFF6918 0.48 -2.3
55,615 + GFF6918 0.48 -0.9
55,616 - GFF6918 0.48 -0.5
55,874 - GFF6918 0.74 -0.9
55,874 - GFF6918 0.74 +0.3
56,128 + -0.1
56,128 + -0.2
56,128 + -0.9
56,128 + +0.2
56,129 - -0.2
56,129 - +0.8
56,129 - +2.2
56,129 - +0.3
56,129 - -0.4
56,159 + -1.0
56,159 + +0.4
56,161 + -0.9
56,161 + +0.7
56,162 - +0.8
56,162 - +0.2
56,162 - -0.5
56,162 - -0.5
56,162 - +0.3
56,207 - +0.2
56,207 - -0.3
56,239 + -0.3
56,239 + +0.6
56,239 + +0.2
56,239 + -0.4
56,239 + -1.3
56,240 - +0.5
56,240 - -0.1
56,240 - +0.2
56,240 - -2.1
56,240 - +0.2
56,240 - -0.0
56,240 - +0.1
56,282 - -1.0
56,282 - +0.6
56,290 - GFF6919 0.13 +0.2
56,290 - GFF6919 0.13 +0.2

Or see this region's nucleotide sequence