Strain Fitness in Variovorax sp. SCN45 around GFF6888

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
20,702	+		GFF6886	0.85	+1.4
20,702	+		GFF6886	0.85	-1.3
20,702	+		GFF6886	0.85	-0.3
20,703	-		GFF6886	0.85	+1.2
20,756	+		GFF6886	0.89	-1.0
20,756	+		GFF6886	0.89	-0.1
20,757	-		GFF6886	0.89	-0.7
20,757	-		GFF6886	0.89	-0.5
20,757	-		GFF6886	0.89	-0.2
20,774	+				+0.5
20,775	-				-0.9
20,775	-				-0.6
20,927	-				+0.4
20,971	+				+0.2
20,971	+				+0.2
20,971	+				-0.5
21,000	+				+0.6
21,000	+				+1.8
21,001	-				-1.2
21,001	-				-0.7
21,011	+				+0.4
21,011	+				-0.7
21,011	+				-2.7
21,012	-				-1.8
21,012	-				+0.0
21,026	+				+0.2
21,026	+				-0.3
21,027	-				-0.1
21,027	-				+0.4
21,282	+		GFF6887	0.41	+0.3
21,283	-		GFF6887	0.41	+0.8
21,283	-		GFF6887	0.41	+0.2
21,283	-		GFF6887	0.41	+0.4
21,283	-		GFF6887	0.41	-0.4
21,283	-		GFF6887	0.41	-0.2
21,283	-		GFF6887	0.41	-0.2
21,283	-		GFF6887	0.41	-0.2
21,283	-		GFF6887	0.41	-0.5
21,300	+		GFF6887	0.43	-0.4
21,300	+		GFF6887	0.43	+0.7
21,300	+		GFF6887	0.43	+0.7
21,300	+		GFF6887	0.43	-0.3
21,300	+		GFF6887	0.43	-0.0
21,300	+		GFF6887	0.43	-0.5
21,300	+		GFF6887	0.43	-0.7
21,300	+		GFF6887	0.43	+0.9
21,300	+		GFF6887	0.43	+0.2
21,300	+		GFF6887	0.43	+0.2
21,300	+		GFF6887	0.43	-0.4
21,300	+		GFF6887	0.43	-0.1
21,300	+		GFF6887	0.43	-0.3
21,300	+		GFF6887	0.43	-1.3
21,301	-		GFF6887	0.44	-0.1
21,301	-		GFF6887	0.44	+0.5
21,301	-		GFF6887	0.44	-0.5
21,301	-		GFF6887	0.44	-0.1
21,301	-		GFF6887	0.44	+0.9
21,301	-		GFF6887	0.44	-1.5
21,301	-		GFF6887	0.44	+0.7
21,301	-		GFF6887	0.44	-0.3
21,301	-		GFF6887	0.44	+1.5
21,301	-		GFF6887	0.44	+0.7
21,301	-		GFF6887	0.44	-2.0
21,301	-		GFF6887	0.44	-0.1
21,301	-		GFF6887	0.44	+0.2
21,519	+		GFF6887	0.80	-0.7
21,519	+		GFF6887	0.80	-0.7
21,519	+		GFF6887	0.80	-0.8
21,520	-		GFF6887	0.80	-0.2
21,520	-		GFF6887	0.80	-0.0
21,520	-		GFF6887	0.80	-1.7
21,520	-		GFF6887	0.80	-0.0
21,520	-		GFF6887	0.80	-1.0
21,634	+				-1.0
21,634	+				+0.5
21,634	+				+0.5
21,634	+				-0.1
21,634	+				-0.7
21,634	+				-0.6
21,634	+				+1.0
21,634	+				+0.1
21,634	+				-0.9
21,634	+				-0.2
21,634	+				+0.5
21,634	+				-0.2
21,634	+				-0.0
21,634	+				+0.5
21,635	-				-0.6
21,635	-				+0.2
21,635	-				+0.0
21,635	-				-0.2
21,635	-				-0.0
21,635	-				-0.2
21,635	-				+0.5
21,635	-				-0.9
21,635	-				+1.8
21,635	-				+0.8
21,917	+		GFF6888	0.29	-1.4
21,918	-		GFF6888	0.29	+0.8
21,918	-		GFF6888	0.29	+0.8
22,166	+		GFF6888	0.54	+0.5
22,166	+		GFF6888	0.54	+0.2
22,166	+		GFF6888	0.54	+0.3
22,166	+		GFF6888	0.54	+0.4
22,167	-		GFF6888	0.54	-0.0
22,167	-		GFF6888	0.54	-0.3
22,167	-		GFF6888	0.54	-0.4
22,167	-		GFF6888	0.54	-0.2
22,167	-		GFF6888	0.54	-0.6
22,167	-		GFF6888	0.54	-1.1
22,172	+		GFF6888	0.55	+0.8
22,172	+		GFF6888	0.55	-0.3
22,172	+		GFF6888	0.55	-0.1
22,172	+		GFF6888	0.55	+0.2
22,172	+		GFF6888	0.55	-0.5
22,172	+		GFF6888	0.55	-0.7
22,172	+		GFF6888	0.55	-0.8
22,172	+		GFF6888	0.55	+1.0
22,172	+		GFF6888	0.55	-0.1
22,173	-		GFF6888	0.55	+0.6
22,173	-		GFF6888	0.55	+1.5
22,173	-		GFF6888	0.55	-1.0
22,173	-		GFF6888	0.55	+0.2
22,173	-		GFF6888	0.55	+0.3
22,173	-		GFF6888	0.55	-1.0
22,173	-		GFF6888	0.55	-0.8
22,173	-		GFF6888	0.55	+1.0
22,258	+		GFF6888	0.63	-0.4
22,316	+		GFF6888	0.69	+3.1
22,316	+		GFF6888	0.69	+1.9
22,316	+		GFF6888	0.69	-0.7
22,316	+		GFF6888	0.69	-0.1
22,316	+		GFF6888	0.69	+0.2
22,317	-		GFF6888	0.69	+0.5
22,317	-		GFF6888	0.69	-0.4
22,317	-		GFF6888	0.69	+1.8
22,317	-		GFF6888	0.69	-0.4
22,317	-		GFF6888	0.69	-0.1
22,828	+		GFF6889	0.13	-0.2
22,832	+		GFF6889	0.13	-1.2
22,832	+		GFF6889	0.13	-1.1
22,832	+		GFF6889	0.13	+0.2
22,832	+		GFF6889	0.13	+0.2
22,832	+		GFF6889	0.13	-0.5
22,832	+		GFF6889	0.13	+0.0
22,833	-		GFF6889	0.13	+0.2
22,833	-		GFF6889	0.13	-0.1
22,833	-		GFF6889	0.13	+0.4
22,833	-		GFF6889	0.13	-1.1
22,833	-		GFF6889	0.13	+0.3
22,864	+		GFF6889	0.16	-0.2
22,864	+		GFF6889	0.16	-0.9
22,864	+		GFF6889	0.16	+0.4
22,864	+		GFF6889	0.16	-0.2
22,864	+		GFF6889	0.16	+0.5
22,864	+		GFF6889	0.16	-0.5
22,864	+		GFF6889	0.16	-1.4
22,865	-		GFF6889	0.16	+0.4
22,865	-		GFF6889	0.16	-0.6
22,865	-		GFF6889	0.16	-0.2
22,882	+		GFF6889	0.17	+0.5
22,883	-		GFF6889	0.18	-0.1
23,035	+		GFF6889	0.30	+0.2
23,035	+		GFF6889	0.30	-1.3
23,035	+		GFF6889	0.30	-0.2
23,035	+		GFF6889	0.30	+0.4
23,035	+		GFF6889	0.30	-0.2
23,035	+		GFF6889	0.30	-0.3
23,035	+		GFF6889	0.30	-0.4
23,035	+		GFF6889	0.30	-0.5
23,035	+		GFF6889	0.30	-0.8
23,036	-		GFF6889	0.30	-0.3
23,036	-		GFF6889	0.30	+0.4
23,036	-		GFF6889	0.30	-1.2
23,036	-		GFF6889	0.30	-0.8
23,155	+		GFF6889	0.40	-3.4
23,156	-		GFF6889	0.40	+1.0
23,156	-		GFF6889	0.40	+0.4
23,338	+		GFF6889	0.55	+0.2
23,338	+		GFF6889	0.55	-1.0
23,338	+		GFF6889	0.55	-1.0
23,338	+		GFF6889	0.55	-0.6
23,338	+		GFF6889	0.55	-1.0
23,338	+		GFF6889	0.55	-0.5
23,338	+		GFF6889	0.55	-0.7
23,338	+		GFF6889	0.55	+0.0
23,338	+		GFF6889	0.55	-1.0
23,339	-		GFF6889	0.55	+0.0
23,339	-		GFF6889	0.55	-1.1
23,339	-		GFF6889	0.55	-0.1
23,339	-		GFF6889	0.55	-0.2
23,339	-		GFF6889	0.55	-2.6
23,410	+		GFF6889	0.61	-1.4
23,411	-		GFF6889	0.61	-0.6
23,411	-		GFF6889	0.61	-0.1
23,411	-		GFF6889	0.61	+0.7
23,411	-		GFF6889	0.61	-1.3
23,536	+		GFF6889	0.72	+0.1
23,536	+		GFF6889	0.72	-0.3
23,536	+		GFF6889	0.72	-1.2
23,536	+		GFF6889	0.72	+0.5
23,536	+		GFF6889	0.72	-0.9
23,537	-		GFF6889	0.72	+0.8
23,537	-		GFF6889	0.72	+1.2
23,537	-		GFF6889	0.72	+0.2