Strain Fitness in Variovorax sp. SCN45 around GFF6738

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6736 and GFF6737 are separated by 212 nucleotidesGFF6737 and GFF6738 overlap by 4 nucleotidesGFF6738 and GFF6739 overlap by 4 nucleotides GFF6736 - Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter, at 47,669 to 49,354 GFF6736 GFF6737 - Uncharacterized aldehyde oxidase, 2Fe-2S subunit, at 49,567 to 50,070 GFF6737 GFF6738 - Uncharacterized aldehyde oxidase, molybdopterin-binding subunit, at 50,067 to 52,316 GFF6738 GFF6739 - Putative diheme cytochrome c-553, at 52,313 to 53,617 GFF6739 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 49.179 kb on + strand, within GFF6736at 49.179 kb on + strand, within GFF6736at 49.179 kb on + strand, within GFF6736at 49.245 kb on + strandat 49.246 kb on - strandat 49.246 kb on - strandat 49.246 kb on - strandat 49.246 kb on - strandat 49.246 kb on - strandat 49.520 kb on - strandat 49.575 kb on + strandat 49.576 kb on - strandat 49.576 kb on - strandat 49.576 kb on - strandat 49.582 kb on - strandat 49.902 kb on - strand, within GFF6737at 49.902 kb on - strand, within GFF6737at 49.935 kb on - strand, within GFF6737at 49.971 kb on + strand, within GFF6737at 49.971 kb on + strand, within GFF6737at 49.972 kb on - strand, within GFF6737at 49.975 kb on + strand, within GFF6737at 49.975 kb on + strand, within GFF6737at 49.975 kb on + strand, within GFF6737at 49.976 kb on - strand, within GFF6737at 50.310 kb on + strand, within GFF6738at 50.310 kb on + strand, within GFF6738at 50.310 kb on + strand, within GFF6738at 50.311 kb on - strand, within GFF6738at 50.311 kb on - strand, within GFF6738at 50.311 kb on - strand, within GFF6738at 50.311 kb on - strand, within GFF6738at 50.460 kb on + strand, within GFF6738at 50.460 kb on + strand, within GFF6738at 50.460 kb on + strand, within GFF6738at 50.460 kb on + strand, within GFF6738at 50.461 kb on - strand, within GFF6738at 51.081 kb on + strand, within GFF6738at 51.081 kb on + strand, within GFF6738at 51.081 kb on + strand, within GFF6738at 51.082 kb on - strand, within GFF6738at 51.082 kb on - strand, within GFF6738at 51.082 kb on - strand, within GFF6738at 51.082 kb on - strand, within GFF6738at 51.252 kb on + strand, within GFF6738at 51.393 kb on + strand, within GFF6738at 51.393 kb on + strand, within GFF6738at 51.393 kb on + strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.394 kb on - strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.552 kb on + strand, within GFF6738at 51.553 kb on - strand, within GFF6738at 51.553 kb on - strand, within GFF6738at 52.367 kb on + strandat 52.460 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.562 kb on + strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.563 kb on - strand, within GFF6739at 52.685 kb on + strand, within GFF6739at 52.685 kb on + strand, within GFF6739at 52.686 kb on - strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.736 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.898 kb on + strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 52.899 kb on - strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.012 kb on + strand, within GFF6739at 53.013 kb on - strand, within GFF6739at 53.075 kb on + strand, within GFF6739

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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49,179 + GFF6736 0.90 -0.2
49,179 + GFF6736 0.90 +0.2
49,179 + GFF6736 0.90 -1.2
49,245 + -0.2
49,246 - +1.4
49,246 - -1.4
49,246 - +0.0
49,246 - -0.3
49,246 - +0.5
49,520 - -0.7
49,575 + +0.2
49,576 - -0.1
49,576 - +0.9
49,576 - +0.4
49,582 - -1.4
49,902 - GFF6737 0.66 -1.2
49,902 - GFF6737 0.66 +1.6
49,935 - GFF6737 0.73 -0.1
49,971 + GFF6737 0.80 +0.2
49,971 + GFF6737 0.80 -1.0
49,972 - GFF6737 0.80 +0.4
49,975 + GFF6737 0.81 +0.2
49,975 + GFF6737 0.81 -1.5
49,975 + GFF6737 0.81 -0.2
49,976 - GFF6737 0.81 -0.5
50,310 + GFF6738 0.11 +0.2
50,310 + GFF6738 0.11 -1.7
50,310 + GFF6738 0.11 +0.6
50,311 - GFF6738 0.11 -1.8
50,311 - GFF6738 0.11 -0.1
50,311 - GFF6738 0.11 -0.4
50,311 - GFF6738 0.11 -0.9
50,460 + GFF6738 0.17 +0.6
50,460 + GFF6738 0.17 -1.8
50,460 + GFF6738 0.17 +0.1
50,460 + GFF6738 0.17 -0.8
50,461 - GFF6738 0.18 -0.8
51,081 + GFF6738 0.45 +0.6
51,081 + GFF6738 0.45 +1.3
51,081 + GFF6738 0.45 -1.2
51,082 - GFF6738 0.45 +1.5
51,082 - GFF6738 0.45 -0.6
51,082 - GFF6738 0.45 -0.2
51,082 - GFF6738 0.45 -0.6
51,252 + GFF6738 0.53 +0.5
51,393 + GFF6738 0.59 -0.9
51,393 + GFF6738 0.59 -0.7
51,393 + GFF6738 0.59 -0.2
51,394 - GFF6738 0.59 -1.0
51,394 - GFF6738 0.59 +1.2
51,394 - GFF6738 0.59 -0.8
51,394 - GFF6738 0.59 -0.5
51,552 + GFF6738 0.66 -1.2
51,552 + GFF6738 0.66 -0.0
51,552 + GFF6738 0.66 +0.4
51,552 + GFF6738 0.66 -0.8
51,553 - GFF6738 0.66 +2.4
51,553 - GFF6738 0.66 -0.9
52,367 + -0.4
52,460 + GFF6739 0.11 -0.3
52,562 + GFF6739 0.19 -0.7
52,562 + GFF6739 0.19 +0.6
52,562 + GFF6739 0.19 +0.8
52,562 + GFF6739 0.19 -0.6
52,562 + GFF6739 0.19 +0.0
52,563 - GFF6739 0.19 -1.0
52,563 - GFF6739 0.19 +1.1
52,563 - GFF6739 0.19 +0.8
52,685 + GFF6739 0.29 -0.3
52,685 + GFF6739 0.29 -0.9
52,686 - GFF6739 0.29 -0.8
52,736 + GFF6739 0.32 +0.1
52,736 + GFF6739 0.32 -0.2
52,736 + GFF6739 0.32 +0.3
52,736 + GFF6739 0.32 +0.6
52,898 + GFF6739 0.45 +0.5
52,898 + GFF6739 0.45 -0.3
52,898 + GFF6739 0.45 +0.3
52,899 - GFF6739 0.45 -1.6
52,899 - GFF6739 0.45 -0.4
52,899 - GFF6739 0.45 -0.8
52,899 - GFF6739 0.45 +0.3
52,899 - GFF6739 0.45 -0.2
53,012 + GFF6739 0.54 -0.1
53,012 + GFF6739 0.54 -0.2
53,012 + GFF6739 0.54 +0.1
53,013 - GFF6739 0.54 -0.8
53,075 + GFF6739 0.58 +1.1

Or see this region's nucleotide sequence