Strain Fitness in Variovorax sp. SCN45 around GFF6674

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
48,336	+		GFF6672	0.13	-0.2
48,336	+		GFF6672	0.13	-0.6
48,336	+		GFF6672	0.13	+0.4
48,336	+		GFF6672	0.13	-0.4
48,336	+		GFF6672	0.13	-0.8
48,336	+		GFF6672	0.13	-2.1
48,336	+		GFF6672	0.13	-0.5
48,336	+		GFF6672	0.13	-0.1
48,336	+		GFF6672	0.13	-1.1
48,336	+		GFF6672	0.13	-0.6
48,337	-		GFF6672	0.14	-0.2
48,337	-		GFF6672	0.14	-0.3
48,337	-		GFF6672	0.14	-1.1
48,337	-		GFF6672	0.14	-0.1
48,337	-		GFF6672	0.14	-0.4
48,337	-		GFF6672	0.14	-0.5
48,337	-		GFF6672	0.14	-0.2
48,337	-		GFF6672	0.14	+0.4
48,337	-		GFF6672	0.14	+0.8
48,337	-		GFF6672	0.14	-2.3
48,337	-		GFF6672	0.14	-2.2
48,337	-		GFF6672	0.14	+1.2
48,337	-		GFF6672	0.14	-0.4
48,584	+				-0.2
48,584	+				-0.4
48,584	+				-1.1
48,584	+				+2.4
48,585	-				-0.5
48,585	-				-0.5
48,585	-				+0.1
48,585	-				-0.9
48,670	+				+0.2
48,670	+				-0.6
48,670	+				-0.5
48,671	-				+0.4
48,671	-				+0.1
48,671	-				+0.4
48,671	-				-0.4
48,671	-				-1.5
48,756	+		GFF6673	0.11	-1.2
48,757	-		GFF6673	0.11	-0.5
48,757	-		GFF6673	0.11	+1.6
48,757	-		GFF6673	0.11	-0.4
48,770	+		GFF6673	0.13	-1.6
48,771	-		GFF6673	0.13	+0.0
48,965	+		GFF6673	0.47	-0.4
48,965	+		GFF6673	0.47	-0.2
48,965	+		GFF6673	0.47	-0.9
48,965	+		GFF6673	0.47	+0.7
48,965	+		GFF6673	0.47	-0.8
48,965	+		GFF6673	0.47	-0.0
48,965	+		GFF6673	0.47	+0.1
48,965	+		GFF6673	0.47	+0.1
48,965	+		GFF6673	0.47	-0.0
48,965	+		GFF6673	0.47	-0.6
48,965	+		GFF6673	0.47	+0.5
48,965	+		GFF6673	0.47	-0.9
48,965	+		GFF6673	0.47	-0.0
48,965	+		GFF6673	0.47	-1.8
48,965	+		GFF6673	0.47	+0.4
48,966	-		GFF6673	0.48	-0.3
48,966	-		GFF6673	0.48	+0.6
48,966	-		GFF6673	0.48	+0.4
48,966	-		GFF6673	0.48	-0.7
48,966	-		GFF6673	0.48	-0.6
48,966	-		GFF6673	0.48	+0.5
49,106	+		GFF6673	0.72	+0.5
49,106	+		GFF6673	0.72	-1.3
49,106	+		GFF6673	0.72	-0.5
49,106	+		GFF6673	0.72	-1.6
49,106	+		GFF6673	0.72	-0.2
49,107	-		GFF6673	0.72	-0.4
49,107	-		GFF6673	0.72	+0.7
49,107	-		GFF6673	0.72	+0.3
49,107	-		GFF6673	0.72	+0.6
49,107	-		GFF6673	0.72	-0.3
49,107	-		GFF6673	0.72	-0.6
49,107	-		GFF6673	0.72	-0.5
49,118	+		GFF6673	0.74	+0.3
49,118	+		GFF6673	0.74	-0.9
49,118	+		GFF6673	0.74	-1.6
49,208	+				-0.1
49,208	+				+0.4
49,208	+				-2.4
49,209	-				+1.7
49,209	-				+0.4
49,262	+				-0.4
49,262	+				+1.7
49,262	+				+0.0
49,263	-				+0.8
49,263	-				+0.0
49,307	+				+0.5
49,308	-				+0.6
49,369	+		GFF6674	0.22	+0.3
49,369	+		GFF6674	0.22	+0.0
49,369	+		GFF6674	0.22	+0.2
49,369	+		GFF6674	0.22	+1.2
49,370	-		GFF6674	0.23	-0.6
49,370	-		GFF6674	0.23	-0.8
49,370	-		GFF6674	0.23	+1.4
49,408	+		GFF6674	0.32	-1.5
49,408	+		GFF6674	0.32	-0.4
49,408	+		GFF6674	0.32	+1.0
49,408	+		GFF6674	0.32	+0.2
49,408	+		GFF6674	0.32	+0.4
49,408	+		GFF6674	0.32	-0.8
49,408	+		GFF6674	0.32	-0.2
49,409	-		GFF6674	0.32	+0.1
49,409	-		GFF6674	0.32	-0.3
49,409	-		GFF6674	0.32	+0.4
49,409	-		GFF6674	0.32	-0.5
49,409	-		GFF6674	0.32	+0.7
49,409	-		GFF6674	0.32	-0.1
49,409	-		GFF6674	0.32	+0.9
49,409	-		GFF6674	0.32	+0.9
49,409	-		GFF6674	0.32	-0.1
49,409	-		GFF6674	0.32	+0.1
49,718	+				-2.2
49,718	+				-0.8
49,718	+				-0.7
49,718	+				-0.0
49,718	+				-0.6
49,718	+				+1.6
49,718	+				+0.8
49,718	+				-0.2
49,718	+				-1.0
49,718	+				-0.5
49,718	+				-2.2
49,718	+				+0.3
49,719	-				-0.2
49,719	-				+0.1
49,719	-				-1.5
49,719	-				-0.3
49,719	-				-0.2
49,889	+		GFF6675	0.20	-0.1
49,889	+		GFF6675	0.20	-0.5
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	-0.5
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	-0.3
49,889	+		GFF6675	0.20	+0.7
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	-0.0
49,889	+		GFF6675	0.20	-2.2
49,889	+		GFF6675	0.20	-0.6
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	-0.1
49,889	+		GFF6675	0.20	-0.2
49,889	+		GFF6675	0.20	+0.2
49,890	-		GFF6675	0.20	-0.0
49,890	-		GFF6675	0.20	-1.1
49,890	-		GFF6675	0.20	-1.9
49,890	-		GFF6675	0.20	-0.3
49,890	-		GFF6675	0.20	+1.0
49,890	-		GFF6675	0.20	+0.2
49,890	-		GFF6675	0.20	+0.8
49,890	-		GFF6675	0.20	-0.9
49,890	-		GFF6675	0.20	+0.5
49,890	-		GFF6675	0.20	-0.0
49,890	-		GFF6675	0.20	-0.9
49,890	-		GFF6675	0.20	+0.8
49,890	-		GFF6675	0.20	+0.4
49,890	-		GFF6675	0.20	-0.3
49,890	-		GFF6675	0.20	-0.6
49,890	-		GFF6675	0.20	-0.1
49,965	-		GFF6675	0.28	-2.1
49,965	-		GFF6675	0.28	-0.2
49,965	-		GFF6675	0.28	+0.3
49,965	-		GFF6675	0.28	-1.4
49,965	-		GFF6675	0.28	-1.4
49,979	+		GFF6675	0.30	+0.7
49,979	+		GFF6675	0.30	-0.1
49,979	+		GFF6675	0.30	+1.1
49,979	+		GFF6675	0.30	-0.7
49,979	+		GFF6675	0.30	+0.6
49,980	-		GFF6675	0.30	+2.1
49,980	-		GFF6675	0.30	-0.1
49,980	-		GFF6675	0.30	-0.8
49,980	-		GFF6675	0.30	-0.7
49,980	-		GFF6675	0.30	-0.2
49,980	-		GFF6675	0.30	+0.4
50,081	+		GFF6675	0.41	+0.2
50,186	+		GFF6675	0.52	+1.9
50,186	+		GFF6675	0.52	+0.1
50,390	+		GFF6675	0.74	+0.0
50,390	+		GFF6675	0.74	-0.2
50,390	+		GFF6675	0.74	-1.1
50,391	-		GFF6675	0.74	+0.7
50,555	+				-0.2
50,555	+				+0.2
50,555	+				-0.0
50,555	+				-1.1
50,555	+				+0.2
50,555	+				-0.6
50,556	+				+1.3
50,556	-				-0.5
50,556	-				+1.4
50,556	-				+0.4
50,556	-				-0.4
50,556	-				-0.7
50,674	+				-1.6
50,674	+				-0.3
50,674	+				-0.3
50,675	-				-0.4
50,675	-				-0.2
50,675	-				-0.9
50,675	-				-0.4
50,675	-				-0.3