Strain Fitness in Variovorax sp. SCN45 around GFF6575

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
16,040	+		GFF6574	0.83	+1.0
16,040	+		GFF6574	0.83	-0.6
16,040	+		GFF6574	0.83	+0.9
16,041	-		GFF6574	0.83	+0.2
16,058	+		GFF6574	0.84	-1.0
16,058	+		GFF6574	0.84	-0.6
16,058	+		GFF6574	0.84	-0.5
16,059	-		GFF6574	0.84	+0.4
16,059	-		GFF6574	0.84	-0.1
16,059	-		GFF6574	0.84	-1.0
16,146	+				-0.3
16,147	-				-0.5
16,147	-				-0.2
16,147	-				+0.1
16,147	-				+0.5
16,147	-				+0.3
16,147	-				-1.4
16,217	+				-0.1
16,218	-				-0.5
16,218	-				+0.3
16,290	-				+0.4
16,313	+				-0.3
16,313	+				-0.3
16,313	+				+0.5
16,314	-				+0.7
16,314	-				+0.1
16,314	-				-0.3
16,668	-		GFF6575	0.50	+0.4
16,668	-		GFF6575	0.50	+1.8
16,668	-		GFF6575	0.50	-1.4
16,679	+		GFF6575	0.52	+2.7
16,680	-		GFF6575	0.52	+0.8
16,718	+		GFF6575	0.57	+0.7
16,849	+		GFF6575	0.74	+0.5
16,849	+		GFF6575	0.74	+0.4
16,850	-		GFF6575	0.74	+0.0
16,850	-		GFF6575	0.74	+0.2
17,300	-		GFF6576	0.10	-0.2
17,300	-		GFF6576	0.10	-0.7
17,302	+		GFF6576	0.10	-0.1
17,302	+		GFF6576	0.10	-0.5
17,302	+		GFF6576	0.10	-0.2
17,302	+		GFF6576	0.10	-0.3
17,302	+		GFF6576	0.10	+0.8
17,302	+		GFF6576	0.10	+1.3
17,302	+		GFF6576	0.10	-1.3
17,302	+		GFF6576	0.10	+1.3
17,302	+		GFF6576	0.10	-0.5
17,302	+		GFF6576	0.10	-0.4
17,303	-		GFF6576	0.10	-1.1
17,303	-		GFF6576	0.10	+0.7
17,303	-		GFF6576	0.10	-0.3
17,303	-		GFF6576	0.10	+0.7
17,303	-		GFF6576	0.10	+0.4
17,303	-		GFF6576	0.10	-0.9
17,303	-		GFF6576	0.10	-0.5
17,303	-		GFF6576	0.10	+0.1
17,305	+		GFF6576	0.10	+1.0
17,305	+		GFF6576	0.10	+1.0
17,305	+		GFF6576	0.10	-0.5
17,306	-		GFF6576	0.11	-1.7
17,306	-		GFF6576	0.11	+0.3
17,306	-		GFF6576	0.11	+0.9
17,306	-		GFF6576	0.11	+0.7
17,371	+		GFF6576	0.13	-1.4
17,371	+		GFF6576	0.13	+1.4
17,371	+		GFF6576	0.13	+3.0
17,371	+		GFF6576	0.13	-0.5
17,372	-		GFF6576	0.13	+0.3
17,372	-		GFF6576	0.13	+0.1
17,645	-		GFF6576	0.24	+0.2
17,788	+		GFF6576	0.30	+1.0
17,788	+		GFF6576	0.30	-1.6
17,788	+		GFF6576	0.30	-0.3
17,788	+		GFF6576	0.30	+0.3
17,788	+		GFF6576	0.30	-0.9
17,788	+		GFF6576	0.30	-0.1
17,789	-		GFF6576	0.30	+0.2
17,789	-		GFF6576	0.30	+0.6
17,789	-		GFF6576	0.30	-0.9
17,789	-		GFF6576	0.30	-0.1
18,040	+		GFF6576	0.40	+0.3
18,040	+		GFF6576	0.40	+0.6