Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6362 and GFF6363 overlap by 4 nucleotides GFF6363 and GFF6364 are separated by 7 nucleotides GFF6364 and GFF6365 are separated by 32 nucleotides
GFF6362 - Pentapeptide repeat family protein, at 26,987 to 29,590
GFF6362
GFF6363 - hypothetical protein, at 29,587 to 29,982
GFF6363
GFF6364 - VgrG protein, at 29,990 to 32,356
GFF6364
GFF6365 - T6SS AAA+ chaperone ClpV (TssH), at 32,389 to 35,109
GFF6365
Position (kb) 29
30
31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.998 kb on + strand, within GFF6362 at 28.998 kb on + strand, within GFF6362 at 28.998 kb on + strand, within GFF6362 at 29.269 kb on - strand, within GFF6362 at 29.358 kb on + strand at 29.359 kb on - strand at 29.359 kb on - strand at 29.359 kb on - strand at 29.765 kb on + strand, within GFF6363 at 29.765 kb on + strand, within GFF6363 at 29.765 kb on + strand, within GFF6363 at 29.765 kb on + strand, within GFF6363 at 29.765 kb on + strand, within GFF6363 at 29.765 kb on + strand, within GFF6363 at 29.766 kb on - strand, within GFF6363 at 29.766 kb on - strand, within GFF6363 at 29.806 kb on + strand, within GFF6363 at 29.806 kb on + strand, within GFF6363 at 29.807 kb on - strand, within GFF6363 at 29.960 kb on + strand at 29.967 kb on - strand at 30.019 kb on - strand at 30.048 kb on + strand at 31.014 kb on + strand, within GFF6364 at 31.015 kb on - strand, within GFF6364 at 31.393 kb on - strand, within GFF6364 at 31.393 kb on - strand, within GFF6364 at 31.414 kb on - strand, within GFF6364 at 31.546 kb on - strand, within GFF6364 at 31.573 kb on - strand, within GFF6364 at 31.686 kb on + strand, within GFF6364 at 31.727 kb on + strand, within GFF6364 at 31.727 kb on + strand, within GFF6364 at 31.728 kb on - strand, within GFF6364 at 31.860 kb on + strand, within GFF6364 at 31.866 kb on + strand, within GFF6364 at 31.866 kb on + strand, within GFF6364 at 31.866 kb on + strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.867 kb on - strand, within GFF6364 at 31.947 kb on + strand, within GFF6364 at 32.091 kb on + strand, within GFF6364 at 32.555 kb on - strand at 32.610 kb on + strand at 32.610 kb on + strand at 32.611 kb on - strand at 32.700 kb on - strand, within GFF6365 at 33.038 kb on + strand, within GFF6365 at 33.128 kb on + strand, within GFF6365
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 28,998 + GFF6362 0.77 -0.1 28,998 + GFF6362 0.77 +2.0 28,998 + GFF6362 0.77 -0.5 29,269 - GFF6362 0.88 -0.1 29,358 + -0.1 29,359 - +0.1 29,359 - -1.7 29,359 - -0.6 29,765 + GFF6363 0.45 +0.0 29,765 + GFF6363 0.45 -1.5 29,765 + GFF6363 0.45 +0.3 29,765 + GFF6363 0.45 +0.1 29,765 + GFF6363 0.45 -0.7 29,765 + GFF6363 0.45 -0.0 29,766 - GFF6363 0.45 +0.3 29,766 - GFF6363 0.45 +1.1 29,806 + GFF6363 0.55 +1.3 29,806 + GFF6363 0.55 -0.7 29,807 - GFF6363 0.56 -0.4 29,960 + +0.4 29,967 - -1.7 30,019 - -0.2 30,048 + -1.2 31,014 + GFF6364 0.43 -0.4 31,015 - GFF6364 0.43 +0.5 31,393 - GFF6364 0.59 -0.3 31,393 - GFF6364 0.59 +0.4 31,414 - GFF6364 0.60 +0.3 31,546 - GFF6364 0.66 +0.4 31,573 - GFF6364 0.67 -1.6 31,686 + GFF6364 0.72 -0.7 31,727 + GFF6364 0.73 -0.9 31,727 + GFF6364 0.73 +0.4 31,728 - GFF6364 0.73 -0.6 31,860 + GFF6364 0.79 -0.1 31,866 + GFF6364 0.79 +0.4 31,866 + GFF6364 0.79 -0.6 31,866 + GFF6364 0.79 -1.8 31,867 - GFF6364 0.79 +0.3 31,867 - GFF6364 0.79 -1.8 31,867 - GFF6364 0.79 -0.9 31,867 - GFF6364 0.79 -1.6 31,867 - GFF6364 0.79 -0.1 31,867 - GFF6364 0.79 -0.1 31,947 + GFF6364 0.83 -0.7 32,091 + GFF6364 0.89 -1.0 32,555 - +0.6 32,610 + +0.2 32,610 + -0.4 32,611 - +0.9 32,700 - GFF6365 0.11 +0.0 33,038 + GFF6365 0.24 +1.0 33,128 + GFF6365 0.27 +0.7
Or see this region's nucleotide sequence