Strain Fitness in Variovorax sp. SCN45 around GFF6248

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6246 and GFF6247 are separated by 51 nucleotidesGFF6247 and GFF6248 are separated by 42 nucleotidesGFF6248 and GFF6249 overlap by 4 nucleotides GFF6246 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 39,778 to 40,473 GFF6246 GFF6247 - ApaG protein, at 40,525 to 40,929 GFF6247 GFF6248 - Site-specific recombinase, at 40,972 to 42,945 GFF6248 GFF6249 - Transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 42,942 to 44,213 GFF6249 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.193 kb on + strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.194 kb on - strand, within GFF6246at 40.296 kb on - strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.346 kb on + strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.347 kb on - strand, within GFF6246at 40.473 kb on + strandat 40.474 kb on - strandat 40.522 kb on - strandat 40.557 kb on - strandat 40.557 kb on - strandat 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.609 kb on + strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.610 kb on - strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.621 kb on + strand, within GFF6247at 40.774 kb on + strand, within GFF6247at 40.775 kb on - strand, within GFF6247at 40.919 kb on + strandat 41.062 kb on - strandat 41.482 kb on + strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.483 kb on - strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.704 kb on + strand, within GFF6248at 41.705 kb on - strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.959 kb on + strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.960 kb on - strand, within GFF6248at 41.983 kb on + strand, within GFF6248at 41.983 kb on + strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 41.984 kb on - strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.058 kb on + strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.059 kb on - strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.109 kb on + strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.110 kb on - strand, within GFF6248at 42.424 kb on + strand, within GFF6248at 42.425 kb on - strand, within GFF6248at 42.425 kb on - strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.523 kb on + strand, within GFF6248at 42.935 kb on + strandat 42.935 kb on + strandat 42.935 kb on + strandat 42.935 kb on + strandat 42.936 kb on - strandat 42.936 kb on - strandat 42.936 kb on - strandat 43.078 kb on - strand, within GFF6249at 43.078 kb on - strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.299 kb on + strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.300 kb on - strand, within GFF6249at 43.311 kb on + strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.312 kb on - strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.476 kb on + strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.477 kb on - strand, within GFF6249at 43.495 kb on - strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249at 43.666 kb on + strand, within GFF6249

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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40,193 + GFF6246 0.60 -1.4
40,193 + GFF6246 0.60 -0.1
40,193 + GFF6246 0.60 -0.4
40,193 + GFF6246 0.60 -0.7
40,193 + GFF6246 0.60 -3.9
40,194 - GFF6246 0.60 -1.8
40,194 - GFF6246 0.60 +1.8
40,194 - GFF6246 0.60 +1.1
40,296 - GFF6246 0.74 +0.5
40,346 + GFF6246 0.82 -1.7
40,346 + GFF6246 0.82 +0.6
40,346 + GFF6246 0.82 -1.2
40,346 + GFF6246 0.82 -1.3
40,346 + GFF6246 0.82 -1.8
40,346 + GFF6246 0.82 +0.4
40,347 - GFF6246 0.82 +0.3
40,347 - GFF6246 0.82 -1.4
40,347 - GFF6246 0.82 -0.8
40,347 - GFF6246 0.82 -0.4
40,347 - GFF6246 0.82 -0.8
40,347 - GFF6246 0.82 -0.5
40,347 - GFF6246 0.82 -0.9
40,473 + -0.2
40,474 - -0.4
40,522 - -0.1
40,557 - -0.2
40,557 - +0.0
40,609 + GFF6247 0.21 -0.2
40,609 + GFF6247 0.21 -0.1
40,609 + GFF6247 0.21 -0.7
40,609 + GFF6247 0.21 -0.5
40,609 + GFF6247 0.21 -0.3
40,609 + GFF6247 0.21 -0.7
40,609 + GFF6247 0.21 +0.1
40,609 + GFF6247 0.21 -0.2
40,609 + GFF6247 0.21 +0.2
40,610 - GFF6247 0.21 -0.6
40,610 - GFF6247 0.21 +0.9
40,610 - GFF6247 0.21 -1.0
40,610 - GFF6247 0.21 -1.6
40,610 - GFF6247 0.21 -0.8
40,610 - GFF6247 0.21 +0.1
40,610 - GFF6247 0.21 -0.5
40,610 - GFF6247 0.21 -0.1
40,621 + GFF6247 0.24 +0.6
40,621 + GFF6247 0.24 -0.1
40,621 + GFF6247 0.24 +0.5
40,774 + GFF6247 0.61 +0.8
40,775 - GFF6247 0.62 +0.3
40,919 + +0.7
41,062 - -0.8
41,482 + GFF6248 0.26 +0.8
41,483 - GFF6248 0.26 +0.6
41,483 - GFF6248 0.26 +0.8
41,483 - GFF6248 0.26 -0.6
41,483 - GFF6248 0.26 -0.3
41,483 - GFF6248 0.26 -0.3
41,704 + GFF6248 0.37 -0.3
41,704 + GFF6248 0.37 -1.0
41,704 + GFF6248 0.37 +1.2
41,704 + GFF6248 0.37 +1.8
41,704 + GFF6248 0.37 +0.8
41,704 + GFF6248 0.37 -0.5
41,705 - GFF6248 0.37 -0.1
41,959 + GFF6248 0.50 -0.7
41,959 + GFF6248 0.50 -0.9
41,959 + GFF6248 0.50 +0.1
41,959 + GFF6248 0.50 +0.1
41,959 + GFF6248 0.50 +0.8
41,959 + GFF6248 0.50 -0.8
41,960 - GFF6248 0.50 +0.5
41,960 - GFF6248 0.50 -0.2
41,960 - GFF6248 0.50 +0.1
41,960 - GFF6248 0.50 -1.8
41,960 - GFF6248 0.50 +0.4
41,960 - GFF6248 0.50 +0.2
41,960 - GFF6248 0.50 +0.1
41,960 - GFF6248 0.50 -0.3
41,960 - GFF6248 0.50 +0.0
41,960 - GFF6248 0.50 +0.8
41,960 - GFF6248 0.50 -0.0
41,983 + GFF6248 0.51 -1.1
41,983 + GFF6248 0.51 +0.2
41,984 - GFF6248 0.51 -0.6
41,984 - GFF6248 0.51 -0.8
41,984 - GFF6248 0.51 -0.6
41,984 - GFF6248 0.51 -0.9
41,984 - GFF6248 0.51 -0.5
42,058 + GFF6248 0.55 +0.7
42,058 + GFF6248 0.55 -0.2
42,058 + GFF6248 0.55 +0.1
42,058 + GFF6248 0.55 -0.0
42,058 + GFF6248 0.55 -0.3
42,059 - GFF6248 0.55 +1.2
42,059 - GFF6248 0.55 -1.5
42,059 - GFF6248 0.55 -1.4
42,109 + GFF6248 0.58 -1.5
42,109 + GFF6248 0.58 +0.3
42,109 + GFF6248 0.58 +0.4
42,109 + GFF6248 0.58 +0.1
42,110 - GFF6248 0.58 +1.8
42,110 - GFF6248 0.58 -0.1
42,110 - GFF6248 0.58 +0.2
42,424 + GFF6248 0.74 -0.6
42,425 - GFF6248 0.74 +1.5
42,425 - GFF6248 0.74 +1.2
42,523 + GFF6248 0.79 -1.0
42,523 + GFF6248 0.79 +0.5
42,523 + GFF6248 0.79 -0.6
42,523 + GFF6248 0.79 +0.1
42,935 + +0.9
42,935 + -0.2
42,935 + -0.4
42,935 + -0.4
42,936 - +0.2
42,936 - -0.7
42,936 - -0.5
43,078 - GFF6249 0.11 -1.3
43,078 - GFF6249 0.11 -1.0
43,299 + GFF6249 0.28 -3.4
43,299 + GFF6249 0.28 -2.6
43,299 + GFF6249 0.28 -0.1
43,299 + GFF6249 0.28 -1.0
43,300 - GFF6249 0.28 +0.4
43,300 - GFF6249 0.28 -0.8
43,311 + GFF6249 0.29 -1.8
43,312 - GFF6249 0.29 -0.9
43,312 - GFF6249 0.29 -1.7
43,476 + GFF6249 0.42 -1.3
43,476 + GFF6249 0.42 -1.5
43,476 + GFF6249 0.42 -1.8
43,476 + GFF6249 0.42 -0.7
43,476 + GFF6249 0.42 -0.7
43,476 + GFF6249 0.42 -1.5
43,477 - GFF6249 0.42 -2.2
43,477 - GFF6249 0.42 -2.2
43,477 - GFF6249 0.42 +0.8
43,477 - GFF6249 0.42 -0.9
43,495 - GFF6249 0.43 -1.6
43,666 + GFF6249 0.57 -2.6
43,666 + GFF6249 0.57 -0.7
43,666 + GFF6249 0.57 -2.7
43,666 + GFF6249 0.57 -0.7

Or see this region's nucleotide sequence