Strain Fitness in Variovorax sp. SCN45 around GFF62

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
77,077	-		GFF61	0.13	-0.5
77,187	+		GFF61	0.22	+2.0
77,188	-		GFF61	0.22	+0.3
77,322	+		GFF61	0.34	-0.3
77,323	-		GFF61	0.34	+0.7
77,323	-		GFF61	0.34	-2.8
77,347	-		GFF61	0.37	+0.6
77,392	-		GFF61	0.41	+0.5
77,424	+		GFF61	0.43	+0.8
77,424	+		GFF61	0.43	-1.2
77,448	+		GFF61	0.46	+0.3
77,449	-		GFF61	0.46	+0.1
77,460	+		GFF61	0.47	-0.8
77,461	-		GFF61	0.47	-0.5
77,461	-		GFF61	0.47	-0.1
77,461	-		GFF61	0.47	-1.3
77,469	+		GFF61	0.47	+0.0
77,470	-		GFF61	0.48	-1.4
77,634	+		GFF61	0.62	-0.1
77,634	+		GFF61	0.62	+0.2
77,682	+		GFF61	0.66	-0.1
77,683	-		GFF61	0.66	-0.5
77,683	-		GFF61	0.66	+0.0
77,706	+		GFF61	0.69	+0.6
78,247	+		GFF62	0.13	-1.0
78,356	-		GFF62	0.21	+0.4
78,356	-		GFF62	0.21	+0.7
78,356	-		GFF62	0.21	-0.7
78,356	-		GFF62	0.21	-0.9
78,356	-		GFF62	0.21	-0.7
78,356	-		GFF62	0.21	-1.1
79,114	+		GFF62	0.77	-2.3
79,114	+		GFF62	0.77	-0.7
79,252	+		GFF62	0.87	-1.5
79,253	-		GFF62	0.87	+0.3
79,439	+				-0.3
79,439	+				-0.1
79,439	+				+0.5
79,440	-				-0.7
79,440	-				-0.0
79,440	-				+0.4
79,448	+				-0.4
79,449	-				-0.9
79,449	-				+0.1
79,574	+		GFF63	0.13	-0.5
79,574	+		GFF63	0.13	-0.5
79,575	-		GFF63	0.13	-0.3
79,575	-		GFF63	0.13	+0.1
79,628	+		GFF63	0.18	-1.0
79,628	+		GFF63	0.18	+0.3
79,629	-		GFF63	0.18	-0.3
79,629	-		GFF63	0.18	-0.7
79,629	-		GFF63	0.18	+0.2
79,637	+		GFF63	0.19	-0.6
79,673	+		GFF63	0.22	+1.3
79,673	+		GFF63	0.22	-1.0
79,691	+		GFF63	0.24	-1.2
79,757	+		GFF63	0.30	+1.0
79,757	+		GFF63	0.30	+0.2
79,757	+		GFF63	0.30	-0.6
79,758	-		GFF63	0.30	-0.1
79,758	-		GFF63	0.30	+1.6
79,758	-		GFF63	0.30	-0.3
79,758	-		GFF63	0.30	-0.7
79,758	-		GFF63	0.30	-1.2
79,758	-		GFF63	0.30	-0.7
79,766	+		GFF63	0.31	-1.2
79,776	-		GFF63	0.32	-0.2
80,000	+		GFF63	0.53	+0.3
80,006	+		GFF63	0.53	-0.7
80,006	+		GFF63	0.53	-0.5
80,006	+		GFF63	0.53	-0.7
80,007	-		GFF63	0.53	+0.2
80,007	-		GFF63	0.53	-2.2
80,202	-		GFF63	0.71	-1.2
80,202	-		GFF63	0.71	-0.3
80,369	+		GFF63	0.87	+0.8
80,369	+		GFF63	0.87	-1.5
80,370	-		GFF63	0.87	-0.5
80,384	+		GFF63	0.88	-0.0