Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6151 and GFF6152 are separated by 92 nucleotides GFF6152 and GFF6153 are separated by 9 nucleotides
GFF6151 - Transcriptional regulator, LysR family, at 56,442 to 57,404
GFF6151
GFF6152 - hypothetical protein, at 57,497 to 57,874
GFF6152
GFF6153 - Transcriptional activator of acetoin/glycerol metabolism, at 57,884 to 59,026
GFF6153
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.712 kb on + strand, within GFF6151 at 56.712 kb on + strand, within GFF6151 at 56.712 kb on + strand, within GFF6151 at 56.713 kb on - strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.997 kb on + strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 56.998 kb on - strand, within GFF6151 at 57.031 kb on - strand, within GFF6151 at 57.121 kb on - strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.306 kb on + strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.307 kb on - strand, within GFF6151 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.539 kb on + strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.540 kb on - strand, within GFF6152 at 57.617 kb on + strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.618 kb on - strand, within GFF6152 at 57.878 kb on + strand at 57.878 kb on + strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.879 kb on - strand at 57.928 kb on - strand at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.269 kb on + strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.270 kb on - strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.509 kb on + strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.510 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153 at 58.648 kb on - strand, within GFF6153
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 56,712 + GFF6151 0.28 -0.6 56,712 + GFF6151 0.28 +0.8 56,712 + GFF6151 0.28 +0.8 56,713 - GFF6151 0.28 +0.0 56,997 + GFF6151 0.58 -0.2 56,997 + GFF6151 0.58 +0.3 56,997 + GFF6151 0.58 -3.2 56,997 + GFF6151 0.58 +1.1 56,997 + GFF6151 0.58 -0.9 56,997 + GFF6151 0.58 -0.2 56,998 - GFF6151 0.58 +0.1 56,998 - GFF6151 0.58 +0.5 56,998 - GFF6151 0.58 +0.8 57,031 - GFF6151 0.61 +1.8 57,121 - GFF6151 0.71 -0.0 57,306 + GFF6151 0.90 -0.7 57,306 + GFF6151 0.90 -1.3 57,306 + GFF6151 0.90 +0.5 57,306 + GFF6151 0.90 +0.3 57,306 + GFF6151 0.90 -0.8 57,307 - GFF6151 0.90 -0.2 57,307 - GFF6151 0.90 +0.1 57,307 - GFF6151 0.90 +0.0 57,307 - GFF6151 0.90 +0.5 57,307 - GFF6151 0.90 +1.2 57,539 + GFF6152 0.11 -2.1 57,539 + GFF6152 0.11 -0.3 57,539 + GFF6152 0.11 -0.2 57,539 + GFF6152 0.11 +0.1 57,539 + GFF6152 0.11 -0.3 57,539 + GFF6152 0.11 +0.3 57,539 + GFF6152 0.11 -0.1 57,539 + GFF6152 0.11 -0.1 57,540 - GFF6152 0.11 +0.6 57,540 - GFF6152 0.11 -0.5 57,617 + GFF6152 0.32 +0.6 57,618 - GFF6152 0.32 -0.3 57,618 - GFF6152 0.32 -0.1 57,618 - GFF6152 0.32 -0.1 57,618 - GFF6152 0.32 -0.1 57,878 + -0.4 57,878 + -0.7 57,879 - -0.1 57,879 - -0.1 57,879 - -0.5 57,928 - -0.2 58,269 + GFF6153 0.34 -0.1 58,269 + GFF6153 0.34 -0.8 58,269 + GFF6153 0.34 -0.0 58,269 + GFF6153 0.34 -0.4 58,269 + GFF6153 0.34 -0.5 58,270 - GFF6153 0.34 -1.5 58,270 - GFF6153 0.34 -0.2 58,509 + GFF6153 0.55 -0.5 58,509 + GFF6153 0.55 +0.5 58,509 + GFF6153 0.55 -0.4 58,510 - GFF6153 0.55 +0.7 58,510 - GFF6153 0.55 -0.4 58,510 - GFF6153 0.55 -0.3 58,510 - GFF6153 0.55 +0.9 58,648 - GFF6153 0.67 -1.1 58,648 - GFF6153 0.67 +0.0
Or see this region's nucleotide sequence