Strain Fitness in Variovorax sp. SCN45 around GFF6146

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
49,266	+		GFF6144	0.89	+0.5
49,266	+		GFF6144	0.89	-0.3
49,267	-		GFF6144	0.90	+0.9
49,524	-				-1.5
49,524	-				-0.1
49,524	-				+0.8
49,804	+		GFF6145	0.37	-1.4
49,805	-		GFF6145	0.38	-2.2
49,939	+		GFF6145	0.56	-0.5
49,939	+		GFF6145	0.56	-1.1
49,940	-		GFF6145	0.56	-0.9
50,011	+		GFF6145	0.66	-0.2
50,011	+		GFF6145	0.66	-0.3
50,012	-		GFF6145	0.66	-0.5
50,012	-		GFF6145	0.66	+0.2
50,391	-		GFF6146	0.11	-0.4
50,519	+		GFF6146	0.21	+0.1
50,519	+		GFF6146	0.21	-0.1
50,571	-		GFF6146	0.25	-0.3
50,777	+		GFF6146	0.42	-0.0
50,777	+		GFF6146	0.42	+1.0
50,853	-		GFF6146	0.48	-0.2
50,853	-		GFF6146	0.48	+1.1
51,035	+		GFF6146	0.63	-0.3
51,035	+		GFF6146	0.63	+0.5
51,035	+		GFF6146	0.63	+1.8
51,063	-		GFF6146	0.65	+0.1
51,149	+		GFF6146	0.72	+0.9
51,150	-		GFF6146	0.72	+0.7
51,150	-		GFF6146	0.72	-0.0
51,663	-		GFF6147	0.10	+0.8
51,721	+		GFF6147	0.14	-0.9
52,108	+		GFF6147	0.41	-2.3
52,108	+		GFF6147	0.41	-0.2
52,109	-		GFF6147	0.41	-0.4