Strain Fitness in Variovorax sp. SCN45 around GFF5936

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
153,433	+		GFF5935	0.59	+1.0
153,434	-		GFF5935	0.59	+1.1
153,886	+		GFF5935	0.78	-0.8
153,886	+		GFF5935	0.78	-0.2
153,886	+		GFF5935	0.78	+0.3
153,886	+		GFF5935	0.78	-0.3
153,887	-		GFF5935	0.78	-1.4
153,887	-		GFF5935	0.78	+0.8
154,132	+		GFF5935	0.89	-0.5
154,133	-		GFF5935	0.89	-0.7
154,629	-				-0.5
154,728	-		GFF5936	0.11	+0.1
155,156	+		GFF5936	0.27	-1.1
155,747	-		GFF5936	0.48	-0.0
155,747	-		GFF5936	0.48	-1.8
156,099	-		GFF5936	0.61	-1.2
156,099	-		GFF5936	0.61	-0.4
156,812	+		GFF5936	0.87	+0.8
156,854	+		GFF5936	0.89	-1.1
156,854	+		GFF5936	0.89	+0.4
156,854	+		GFF5936	0.89	-1.0
156,981	-				+0.2
157,056	-				-1.4
157,107	-				-0.4
157,107	-				-0.7
157,631	+		GFF5937	0.42	-0.9
157,841	+		GFF5937	0.63	-1.7
157,842	-		GFF5937	0.63	-0.4