Strain Fitness in Variovorax sp. SCN45 around GFF5903

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
118,397	+		GFF5902	0.22	-0.2
118,397	+		GFF5902	0.22	+1.4
118,397	+		GFF5902	0.22	-0.4
118,398	-		GFF5902	0.22	-0.4
118,398	-		GFF5902	0.22	-1.8
118,799	+		GFF5902	0.67	-0.9
118,799	+		GFF5902	0.67	+0.5
118,800	-		GFF5902	0.67	-0.7
118,800	-		GFF5902	0.67	-0.9
118,800	-		GFF5902	0.67	+0.2
118,800	-		GFF5902	0.67	-0.9
118,826	+		GFF5902	0.70	+0.1
118,826	+		GFF5902	0.70	-0.3
118,827	-		GFF5902	0.70	+0.5
118,832	+		GFF5902	0.71	-0.7
118,832	+		GFF5902	0.71	-1.4
118,832	+		GFF5902	0.71	-0.5
118,833	-		GFF5902	0.71	-0.4
118,833	-		GFF5902	0.71	-0.4
118,833	-		GFF5902	0.71	-0.4
118,907	+		GFF5902	0.79	-0.5
118,908	-		GFF5902	0.79	+0.1
118,908	-		GFF5902	0.79	+0.6
119,075	+				+0.8
119,076	-				+0.5
119,097	+				-1.3
119,097	+				-1.1
119,097	+				+1.8
119,098	-				-1.2
119,138	+				-0.5
119,138	+				+0.8
119,138	+				+0.1
119,138	+				-0.2
119,138	+				-0.9
119,138	+				-1.9
119,138	+				-0.9
119,138	+				-2.3
119,138	+				-0.2
119,138	+				-0.4
119,138	+				-0.5
119,138	+				+0.4
119,138	+				-0.1
119,139	-				+0.2
119,139	-				-0.5
119,139	-				+0.6
119,139	-				+0.4
119,139	-				-0.2
119,139	-				+0.8
119,139	-				-0.5
119,139	-				-0.7
119,139	-				+0.9
119,139	-				+0.4
119,139	-				-0.5
119,139	-				-0.5
119,139	-				-0.8
119,139	-				+0.1
119,139	-				-0.4
119,417	-		GFF5903	0.35	+0.0
119,554	+		GFF5903	0.59	-0.2
119,554	+		GFF5903	0.59	-0.8
119,555	-		GFF5903	0.60	-1.7
119,555	-		GFF5903	0.60	-0.4
119,555	-		GFF5903	0.60	-0.7
119,941	-				-1.8
119,987	+		GFF5904	0.13	-0.4
119,988	-		GFF5904	0.13	-0.3
120,080	+		GFF5904	0.20	-1.8
120,080	+		GFF5904	0.20	-1.0
120,080	+		GFF5904	0.20	-0.5
120,081	-		GFF5904	0.20	+0.7
120,081	-		GFF5904	0.20	-0.2
120,263	+		GFF5904	0.33	-0.2
120,263	+		GFF5904	0.33	+0.6
120,264	-		GFF5904	0.33	-0.4
120,311	+		GFF5904	0.36	-0.5
120,311	+		GFF5904	0.36	-0.2
120,311	+		GFF5904	0.36	+1.2
120,311	+		GFF5904	0.36	+0.7
120,311	+		GFF5904	0.36	-0.4
120,311	+		GFF5904	0.36	+0.5
120,311	+		GFF5904	0.36	-0.4
120,312	-		GFF5904	0.36	-0.4
120,312	-		GFF5904	0.36	-0.1
120,314	+		GFF5904	0.36	+0.8
120,314	+		GFF5904	0.36	-0.4
120,314	+		GFF5904	0.36	-0.5
120,314	+		GFF5904	0.36	-0.2
120,315	-		GFF5904	0.37	-0.2
120,315	-		GFF5904	0.37	-0.6
120,315	-		GFF5904	0.37	-0.4
120,315	-		GFF5904	0.37	+0.3
120,315	-		GFF5904	0.37	-0.1
120,315	-		GFF5904	0.37	-0.3
120,374	+		GFF5904	0.41	+0.0
120,488	+		GFF5904	0.49	-0.4
120,489	-		GFF5904	0.49	-2.2
120,489	-		GFF5904	0.49	-0.1
120,614	+		GFF5904	0.58	+1.3
120,615	-		GFF5904	0.58	-0.2