Strain Fitness in Variovorax sp. SCN45 around GFF5902

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
117,385	+		GFF5900	0.15	-1.2
117,385	+		GFF5900	0.15	-2.0
117,386	-		GFF5900	0.15	+0.2
117,386	-		GFF5900	0.15	-0.1
117,386	-		GFF5900	0.15	+0.6
117,386	-		GFF5900	0.15	-0.8
117,486	+		GFF5900	0.75	+1.4
117,486	+		GFF5900	0.75	-0.6
117,486	+		GFF5900	0.75	+0.3
117,486	+		GFF5900	0.75	-0.2
117,486	+		GFF5900	0.75	-1.9
117,487	-		GFF5900	0.76	+0.7
117,487	-		GFF5900	0.76	-0.7
117,487	-		GFF5900	0.76	+1.0
117,487	-		GFF5900	0.76	-1.7
117,577	+				+0.3
117,583	+				+1.8
117,584	-				+0.2
117,584	-				-0.8
117,587	+				-0.0
117,587	+				-1.5
117,587	+				-0.5
117,587	+				+0.7
117,588	-				+0.8
117,588	-				+0.1
117,588	-				+1.6
117,588	-				-0.3
117,588	-				+0.2
117,588	-				-2.1
117,590	+				-1.0
117,591	-				-0.5
117,593	+				-0.8
117,593	+				-0.6
117,594	-				-0.7
117,594	-				+0.4
117,594	-				-0.4
117,596	+				-0.2
117,596	+				+0.7
117,596	+				+0.2
117,596	+				-1.4
117,596	+				+0.2
117,596	+				+0.3
117,597	-				-0.7
117,597	-				-1.8
117,597	-				+0.5
117,613	+				-0.3
117,614	-				+0.3
117,617	+				-1.4
117,617	+				-1.0
117,617	+				-1.3
117,617	+				-0.5
117,617	+				+0.2
117,617	+				+0.8
117,617	+				-0.8
117,618	-				+0.8
117,618	-				-0.7
117,618	-				-2.2
117,618	-				-0.5
117,618	-				+0.3
117,618	-				+0.1
117,618	-				-0.2
117,618	-				+1.1
117,618	-				+0.9
117,624	+				-0.0
117,624	+				+0.6
117,625	-				+0.2
117,625	-				+0.0
117,625	-				-0.7
117,841	+		GFF5901	0.45	-0.1
117,841	+		GFF5901	0.45	+1.1
117,841	+		GFF5901	0.45	-0.6
117,841	+		GFF5901	0.45	-0.5
117,841	+		GFF5901	0.45	+0.8
117,842	-		GFF5901	0.46	+0.1
117,842	-		GFF5901	0.46	+0.1
117,842	-		GFF5901	0.46	+0.1
118,036	+				-0.7
118,037	-				-0.8
118,037	-				-0.7
118,037	-				-1.9
118,042	+				+0.1
118,063	+				+2.3
118,064	-				+2.4
118,064	-				-1.1
118,064	-				+0.2
118,064	-				-0.8
118,064	-				+0.3
118,064	-				-0.5
118,064	-				-1.3
118,397	+		GFF5902	0.22	-0.2
118,397	+		GFF5902	0.22	+1.4
118,397	+		GFF5902	0.22	-0.4
118,398	-		GFF5902	0.22	-0.4
118,398	-		GFF5902	0.22	-1.8
118,799	+		GFF5902	0.67	-0.9
118,799	+		GFF5902	0.67	+0.5
118,800	-		GFF5902	0.67	-0.7
118,800	-		GFF5902	0.67	-0.9
118,800	-		GFF5902	0.67	+0.2
118,800	-		GFF5902	0.67	-0.9
118,826	+		GFF5902	0.70	+0.1
118,826	+		GFF5902	0.70	-0.3
118,827	-		GFF5902	0.70	+0.5
118,832	+		GFF5902	0.71	-0.7
118,832	+		GFF5902	0.71	-1.4
118,832	+		GFF5902	0.71	-0.5
118,833	-		GFF5902	0.71	-0.4
118,833	-		GFF5902	0.71	-0.4
118,833	-		GFF5902	0.71	-0.4
118,907	+		GFF5902	0.79	-0.5
118,908	-		GFF5902	0.79	+0.1
118,908	-		GFF5902	0.79	+0.6
119,075	+				+0.8
119,076	-				+0.5
119,097	+				-1.3
119,097	+				-1.1
119,097	+				+1.8
119,098	-				-1.2
119,138	+				-0.5
119,138	+				+0.8
119,138	+				+0.1
119,138	+				-0.2
119,138	+				-0.9
119,138	+				-1.9
119,138	+				-0.9
119,138	+				-2.3
119,138	+				-0.2
119,138	+				-0.4
119,138	+				-0.5
119,138	+				+0.4
119,138	+				-0.1
119,139	-				+0.2
119,139	-				-0.5
119,139	-				+0.6
119,139	-				+0.4
119,139	-				-0.2
119,139	-				+0.8
119,139	-				-0.5
119,139	-				-0.7
119,139	-				+0.9
119,139	-				+0.4
119,139	-				-0.5
119,139	-				-0.5
119,139	-				-0.8
119,139	-				+0.1
119,139	-				-0.4
119,417	-		GFF5903	0.35	+0.0
119,554	+		GFF5903	0.59	-0.2
119,554	+		GFF5903	0.59	-0.8
119,555	-		GFF5903	0.60	-1.7
119,555	-		GFF5903	0.60	-0.4
119,555	-		GFF5903	0.60	-0.7
119,941	-				-1.8
119,987	+		GFF5904	0.13	-0.4
119,988	-		GFF5904	0.13	-0.3
120,080	+		GFF5904	0.20	-1.8
120,080	+		GFF5904	0.20	-1.0
120,080	+		GFF5904	0.20	-0.5
120,081	-		GFF5904	0.20	+0.7
120,081	-		GFF5904	0.20	-0.2