Strain Fitness in Variovorax sp. SCN45 around GFF5858

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5857 and GFF5858 overlap by 4 nucleotidesGFF5858 and GFF5859 are separated by 119 nucleotidesGFF5859 and GFF5860 are separated by 14 nucleotides GFF5857 - Fe2+-dicitrate sensor, membrane component, at 58,523 to 59,509 GFF5857 GFF5858 - heme uptake regulator, at 59,506 to 60,033 GFF5858 GFF5859 - KEGG: nickel transport system substrate-binding protein, at 60,153 to 60,905 GFF5859 GFF5860 - no description, at 60,920 to 63,355 GFF5860 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 58.548 kb on + strandat 58.548 kb on + strandat 58.549 kb on - strandat 58.549 kb on - strandat 58.549 kb on - strandat 58.734 kb on + strand, within GFF5857at 58.734 kb on + strand, within GFF5857at 58.734 kb on - strand, within GFF5857at 58.735 kb on - strand, within GFF5857at 58.735 kb on - strand, within GFF5857at 58.735 kb on - strand, within GFF5857at 58.921 kb on + strand, within GFF5857at 58.921 kb on + strand, within GFF5857at 58.921 kb on + strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 58.922 kb on - strand, within GFF5857at 59.175 kb on + strand, within GFF5857at 59.175 kb on + strand, within GFF5857at 59.175 kb on + strand, within GFF5857at 59.176 kb on - strand, within GFF5857at 59.369 kb on + strand, within GFF5857at 59.369 kb on + strand, within GFF5857at 59.369 kb on + strand, within GFF5857at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.561 kb on + strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.562 kb on - strand, within GFF5858at 59.612 kb on + strand, within GFF5858at 59.612 kb on + strand, within GFF5858at 59.613 kb on - strand, within GFF5858at 59.613 kb on - strand, within GFF5858at 59.771 kb on + strand, within GFF5858at 59.771 kb on + strand, within GFF5858at 59.771 kb on + strand, within GFF5858at 59.772 kb on - strand, within GFF5858at 59.772 kb on - strand, within GFF5858at 59.772 kb on - strand, within GFF5858at 59.837 kb on + strand, within GFF5858at 59.838 kb on - strand, within GFF5858at 59.929 kb on + strand, within GFF5858at 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.987 kb on + strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 59.988 kb on - strandat 60.093 kb on + strandat 60.118 kb on - strandat 60.118 kb on - strandat 60.508 kb on + strand, within GFF5859at 60.508 kb on + strand, within GFF5859at 60.508 kb on + strand, within GFF5859at 60.508 kb on + strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.509 kb on - strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.517 kb on + strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.518 kb on - strand, within GFF5859at 60.739 kb on + strand, within GFF5859at 60.739 kb on + strand, within GFF5859at 60.739 kb on + strand, within GFF5859at 60.740 kb on - strand, within GFF5859at 60.981 kb on + strandat 60.981 kb on + strandat 60.981 kb on + strandat 60.981 kb on + strandat 60.981 kb on + strandat 60.981 kb on + strandat 60.982 kb on - strandat 60.982 kb on - strandat 60.982 kb on - strandat 60.982 kb on - strandat 60.982 kb on - strandat 61.000 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
58,548 + -0.2
58,548 + -0.4
58,549 - +0.4
58,549 - -2.1
58,549 - -0.2
58,734 + GFF5857 0.21 -0.1
58,734 + GFF5857 0.21 -0.2
58,734 - GFF5857 0.21 +0.9
58,735 - GFF5857 0.21 -0.7
58,735 - GFF5857 0.21 +0.1
58,735 - GFF5857 0.21 +3.1
58,921 + GFF5857 0.40 +0.5
58,921 + GFF5857 0.40 -1.0
58,921 + GFF5857 0.40 -0.4
58,922 - GFF5857 0.40 -0.9
58,922 - GFF5857 0.40 -1.9
58,922 - GFF5857 0.40 +0.4
58,922 - GFF5857 0.40 -0.0
58,922 - GFF5857 0.40 -0.8
58,922 - GFF5857 0.40 +0.2
58,922 - GFF5857 0.40 -0.4
58,922 - GFF5857 0.40 -0.1
58,922 - GFF5857 0.40 -0.5
59,175 + GFF5857 0.66 -1.0
59,175 + GFF5857 0.66 +0.1
59,175 + GFF5857 0.66 -0.5
59,176 - GFF5857 0.66 +0.1
59,369 + GFF5857 0.86 -0.9
59,369 + GFF5857 0.86 -0.2
59,369 + GFF5857 0.86 -0.3
59,561 + GFF5858 0.10 -0.9
59,561 + GFF5858 0.10 -0.5
59,561 + GFF5858 0.10 +0.8
59,561 + GFF5858 0.10 -0.4
59,561 + GFF5858 0.10 -0.4
59,561 + GFF5858 0.10 -0.5
59,561 + GFF5858 0.10 -0.7
59,561 + GFF5858 0.10 +0.1
59,561 + GFF5858 0.10 -0.2
59,561 + GFF5858 0.10 -0.1
59,562 - GFF5858 0.11 +0.7
59,562 - GFF5858 0.11 -0.5
59,562 - GFF5858 0.11 -0.0
59,562 - GFF5858 0.11 +1.5
59,562 - GFF5858 0.11 +0.2
59,562 - GFF5858 0.11 +1.5
59,562 - GFF5858 0.11 +0.5
59,612 + GFF5858 0.20 +0.1
59,612 + GFF5858 0.20 +0.5
59,613 - GFF5858 0.20 +0.5
59,613 - GFF5858 0.20 -0.1
59,771 + GFF5858 0.50 -0.6
59,771 + GFF5858 0.50 -0.3
59,771 + GFF5858 0.50 +0.5
59,772 - GFF5858 0.50 -0.4
59,772 - GFF5858 0.50 -0.3
59,772 - GFF5858 0.50 +1.0
59,837 + GFF5858 0.63 -1.8
59,838 - GFF5858 0.63 -0.2
59,929 + GFF5858 0.80 +0.0
59,987 + -0.8
59,987 + +0.1
59,987 + -0.3
59,987 + -0.4
59,987 + -1.4
59,987 + -0.6
59,987 + -0.1
59,987 + +0.5
59,987 + -0.5
59,987 + -0.2
59,987 + +0.9
59,987 + -0.4
59,988 - +0.8
59,988 - -0.4
59,988 - +0.0
59,988 - -0.3
59,988 - -0.2
59,988 - -0.7
59,988 - -0.2
59,988 - +0.5
60,093 + -0.4
60,118 - +0.1
60,118 - -0.6
60,508 + GFF5859 0.47 -0.7
60,508 + GFF5859 0.47 +0.1
60,508 + GFF5859 0.47 -2.8
60,508 + GFF5859 0.47 +0.0
60,509 - GFF5859 0.47 -0.0
60,509 - GFF5859 0.47 +0.2
60,509 - GFF5859 0.47 -0.2
60,509 - GFF5859 0.47 -0.2
60,509 - GFF5859 0.47 +1.8
60,509 - GFF5859 0.47 +1.3
60,517 + GFF5859 0.48 -0.1
60,517 + GFF5859 0.48 -0.2
60,517 + GFF5859 0.48 -1.3
60,517 + GFF5859 0.48 -0.6
60,517 + GFF5859 0.48 -0.4
60,517 + GFF5859 0.48 +0.6
60,517 + GFF5859 0.48 -0.3
60,517 + GFF5859 0.48 +0.2
60,517 + GFF5859 0.48 +0.1
60,517 + GFF5859 0.48 +0.6
60,517 + GFF5859 0.48 +0.2
60,517 + GFF5859 0.48 +0.1
60,517 + GFF5859 0.48 -1.7
60,517 + GFF5859 0.48 -1.1
60,517 + GFF5859 0.48 -0.2
60,518 - GFF5859 0.48 +1.2
60,518 - GFF5859 0.48 -1.8
60,518 - GFF5859 0.48 +0.5
60,518 - GFF5859 0.48 -1.5
60,518 - GFF5859 0.48 -0.5
60,518 - GFF5859 0.48 +0.3
60,518 - GFF5859 0.48 +0.3
60,518 - GFF5859 0.48 -0.6
60,518 - GFF5859 0.48 +0.3
60,518 - GFF5859 0.48 +0.8
60,518 - GFF5859 0.48 -0.2
60,518 - GFF5859 0.48 -0.0
60,518 - GFF5859 0.48 -0.6
60,739 + GFF5859 0.78 -0.5
60,739 + GFF5859 0.78 +1.1
60,739 + GFF5859 0.78 -0.1
60,740 - GFF5859 0.78 +0.2
60,981 + +0.9
60,981 + -0.4
60,981 + -0.0
60,981 + +0.2
60,981 + -0.8
60,981 + +0.0
60,982 - -0.2
60,982 - +0.1
60,982 - -0.7
60,982 - -0.4
60,982 - -0.2
61,000 - -0.9

Or see this region's nucleotide sequence