Strain Fitness in Variovorax sp. SCN45 around GFF5779

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
152,770	-				-0.3
152,770	-				-1.5
152,805	+				-0.5
152,805	+				-0.9
152,806	-				-0.3
152,806	-				-0.6
152,806	-				-1.1
152,806	-				+0.5
152,955	+		GFF5778	0.24	-0.1
152,956	-		GFF5778	0.24	+0.0
152,956	-		GFF5778	0.24	-1.4
153,785	+				+0.7
153,785	+				+1.5
153,785	+				-0.3
153,786	-				-1.1
153,786	-				-0.3
153,786	-				-1.5
153,786	-				-0.5
153,832	+		GFF5779	0.13	+1.1
153,832	+		GFF5779	0.13	+0.2
153,833	-		GFF5779	0.13	+1.7
153,833	-		GFF5779	0.13	+0.7
154,039	+		GFF5779	0.32	+0.5
154,039	+		GFF5779	0.32	-0.2
154,039	+		GFF5779	0.32	-2.0
154,040	-		GFF5779	0.32	-1.5
154,040	-		GFF5779	0.32	+0.7
154,393	+		GFF5779	0.66	+0.6
154,653	+				-1.6
154,654	-				+0.5
155,108	+		GFF5780	0.34	-0.0
155,486	+		GFF5780	0.71	-0.5
155,639	+		GFF5780	0.86	-0.8
155,639	+		GFF5780	0.86	+1.3
155,639	+		GFF5780	0.86	+0.1
155,640	-		GFF5780	0.87	-0.1
155,640	-		GFF5780	0.87	-0.5
155,640	-		GFF5780	0.87	-0.4
155,640	-		GFF5780	0.87	+0.2
155,640	-		GFF5780	0.87	+1.0
155,640	-		GFF5780	0.87	+2.3
155,640	-		GFF5780	0.87	-0.5
155,640	-		GFF5780	0.87	-0.1