Strain Fitness in Variovorax sp. SCN45 around GFF5750

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
122,404	+		GFF5749	0.77	-0.7
122,404	+		GFF5749	0.77	-1.3
122,404	+		GFF5749	0.77	-0.2
122,404	+		GFF5749	0.77	-1.1
122,405	-		GFF5749	0.77	-0.9
122,699	+				-1.0
122,699	+				-0.7
122,699	+				-0.6
122,700	-				-0.2
122,700	-				-1.1
122,700	-				+1.1
122,700	-				+2.2
122,700	-				-0.6
122,700	-				-0.3
122,888	+		GFF5750	0.15	-0.3
122,888	+		GFF5750	0.15	+1.1
122,889	-		GFF5750	0.15	+0.0
122,889	-		GFF5750	0.15	-0.1
122,897	+		GFF5750	0.16	+0.1
123,212	+		GFF5750	0.34	+0.5
123,212	+		GFF5750	0.34	+0.2
123,213	-		GFF5750	0.34	+0.1
123,213	-		GFF5750	0.34	-0.7
123,213	-		GFF5750	0.34	+1.7
123,503	+		GFF5750	0.51	+1.9
123,503	+		GFF5750	0.51	+1.3
123,503	+		GFF5750	0.51	+0.1
123,503	+		GFF5750	0.51	+0.1
123,504	-		GFF5750	0.51	+0.6
123,504	-		GFF5750	0.51	+0.6
123,504	-		GFF5750	0.51	-1.8
123,504	-		GFF5750	0.51	+0.2
123,614	+		GFF5750	0.57	+0.5
123,615	-		GFF5750	0.57	+1.2
123,615	-		GFF5750	0.57	-1.8
123,615	-		GFF5750	0.57	-0.6
123,638	+		GFF5750	0.58	-0.3
123,638	+		GFF5750	0.58	-0.6
123,638	+		GFF5750	0.58	+0.7
123,639	-		GFF5750	0.58	+0.0
123,639	-		GFF5750	0.58	-0.1
123,953	+		GFF5750	0.77	-0.6
124,118	+		GFF5750	0.86	+2.2
124,118	+		GFF5750	0.86	-0.2
124,119	-		GFF5750	0.86	-1.3
124,182	+		GFF5750	0.90	+0.0
124,182	+		GFF5750	0.90	-1.1
124,182	+		GFF5750	0.90	+0.1
124,183	-		GFF5750	0.90	+0.1
124,183	-		GFF5750	0.90	-0.3
124,183	-		GFF5750	0.90	+0.0
124,184	+		GFF5750	0.90	+0.7
124,184	+		GFF5750	0.90	-0.1
124,184	+		GFF5750	0.90	-0.2
124,184	+		GFF5750	0.90	-1.0
124,184	+		GFF5750	0.90	-0.2
124,185	-		GFF5750	0.90	+1.7
124,185	-		GFF5750	0.90	+0.1
124,185	-		GFF5750	0.90	-0.7
124,185	-		GFF5750	0.90	-0.9
124,185	-		GFF5750	0.90	-0.7
124,196	+				-1.1
124,197	-				+2.0
124,197	-				+0.1
124,787	+		GFF5751	0.43	-0.2
124,788	-		GFF5751	0.43	-0.0
124,812	+		GFF5751	0.50	-1.0
124,813	-		GFF5751	0.51	-0.3
125,025	-				-0.8