Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5604 and GFF5605 are separated by 1 nucleotides GFF5605 and GFF5606 are separated by 1 nucleotides GFF5606 and GFF5607 are separated by 4 nucleotides
GFF5604 - D-xylose ABC transporter, permease protein XylH, at 222,885 to 224,075
GFF5604
GFF5605 - D-xylose ABC transporter, ATP-binding protein XylG, at 224,077 to 224,874
GFF5605
GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039
GFF5606
GFF5607 - Sigma-54 activated regulatory protein, at 226,044 to 227,324
GFF5607
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 224.049 kb on + strand at 224.179 kb on + strand, within GFF5605 at 224.180 kb on - strand, within GFF5605 at 224.350 kb on + strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.351 kb on - strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.569 kb on + strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.570 kb on - strand, within GFF5605 at 224.767 kb on + strand, within GFF5605 at 224.768 kb on - strand, within GFF5605 at 225.194 kb on + strand, within GFF5606 at 225.492 kb on - strand, within GFF5606 at 225.492 kb on - strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.645 kb on + strand, within GFF5606 at 225.972 kb on - strand at 225.972 kb on - strand at 225.972 kb on - strand at 226.093 kb on + strand at 226.093 kb on + strand at 226.226 kb on + strand, within GFF5607 at 226.227 kb on - strand, within GFF5607 at 226.620 kb on + strand, within GFF5607 at 226.621 kb on - strand, within GFF5607 at 226.621 kb on - strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.675 kb on + strand, within GFF5607 at 226.676 kb on - strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.810 kb on + strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607 at 226.811 kb on - strand, within GFF5607
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 224,049 + -1.8 224,179 + GFF5605 0.13 -1.6 224,180 - GFF5605 0.13 -0.9 224,350 + GFF5605 0.34 -1.1 224,351 - GFF5605 0.34 +0.0 224,351 - GFF5605 0.34 -3.0 224,351 - GFF5605 0.34 -2.4 224,569 + GFF5605 0.62 -0.5 224,569 + GFF5605 0.62 -1.3 224,570 - GFF5605 0.62 -2.0 224,570 - GFF5605 0.62 -1.7 224,767 + GFF5605 0.86 -0.1 224,768 - GFF5605 0.87 -3.3 225,194 + GFF5606 0.27 +0.3 225,492 - GFF5606 0.53 +0.8 225,492 - GFF5606 0.53 +0.2 225,645 + GFF5606 0.66 +1.2 225,645 + GFF5606 0.66 +0.3 225,645 + GFF5606 0.66 +0.0 225,645 + GFF5606 0.66 +1.3 225,972 - +0.5 225,972 - +0.5 225,972 - +0.9 226,093 + -0.4 226,093 + -0.8 226,226 + GFF5607 0.14 -1.7 226,227 - GFF5607 0.14 +0.1 226,620 + GFF5607 0.45 -1.1 226,621 - GFF5607 0.45 -1.8 226,621 - GFF5607 0.45 -0.9 226,675 + GFF5607 0.49 -0.9 226,675 + GFF5607 0.49 +0.3 226,675 + GFF5607 0.49 +0.7 226,676 - GFF5607 0.49 +0.0 226,810 + GFF5607 0.60 -0.3 226,810 + GFF5607 0.60 -0.6 226,810 + GFF5607 0.60 -0.3 226,810 + GFF5607 0.60 -1.4 226,810 + GFF5607 0.60 -1.7 226,810 + GFF5607 0.60 -0.4 226,811 - GFF5607 0.60 -0.6 226,811 - GFF5607 0.60 +0.4 226,811 - GFF5607 0.60 -0.5 226,811 - GFF5607 0.60 -0.5 226,811 - GFF5607 0.60 -0.5
Or see this region's nucleotide sequence