Strain Fitness in Variovorax sp. SCN45 around GFF555

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF553 and GFF554 are separated by 25 nucleotidesGFF554 and GFF555 are separated by 17 nucleotidesGFF555 and GFF556 are separated by 81 nucleotidesGFF556 and GFF557 are separated by 70 nucleotides GFF553 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 594,654 to 595,166 GFF553 GFF554 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 595,192 to 595,968 GFF554 GFF555 - Putative inner membrane protein, at 595,986 to 596,789 GFF555 GFF556 - no description, at 596,871 to 597,467 GFF556 GFF557 - Plectin 1, at 597,538 to 600,381 GFF557 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 595.966 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.244 kb on + strand, within GFF555at 596.244 kb on + strand, within GFF555at 596.245 kb on - strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.644 kb on - strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.765 kb on + strandat 596.805 kb on - strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.844 kb on + strandat 596.845 kb on - strandat 596.863 kb on + strandat 596.863 kb on + strandat 596.864 kb on - strandat 596.864 kb on - strandat 596.871 kb on - strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.935 kb on + strand, within GFF556at 596.935 kb on + strand, within GFF556at 596.936 kb on - strand, within GFF556at 596.952 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.090 kb on + strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.091 kb on - strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.147 kb on + strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.148 kb on - strand, within GFF556at 597.231 kb on + strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.232 kb on - strand, within GFF556at 597.411 kb on + strandat 597.411 kb on + strandat 597.411 kb on + strandat 597.411 kb on + strandat 597.412 kb on - strandat 597.412 kb on - strandat 597.412 kb on - strandat 597.479 kb on + strandat 597.479 kb on + strandat 597.479 kb on + strandat 597.480 kb on - strandat 597.480 kb on - strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.539 kb on + strandat 597.540 kb on - strandat 597.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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595,966 + -0.6
596,061 + +1.3
596,061 + -0.5
596,061 + +0.1
596,061 + -0.7
596,244 + GFF555 0.32 +0.6
596,244 + GFF555 0.32 +1.8
596,245 - GFF555 0.32 -2.1
596,331 + GFF555 0.43 +0.4
596,331 + GFF555 0.43 +0.8
596,331 + GFF555 0.43 -1.1
596,331 + GFF555 0.43 -0.4
596,331 + GFF555 0.43 -1.1
596,331 + GFF555 0.43 -0.3
596,331 + GFF555 0.43 -1.2
596,331 + GFF555 0.43 +1.3
596,331 + GFF555 0.43 +1.3
596,331 + GFF555 0.43 -1.4
596,332 - GFF555 0.43 +0.3
596,332 - GFF555 0.43 -0.9
596,332 - GFF555 0.43 +0.4
596,332 - GFF555 0.43 +0.9
596,427 + GFF555 0.55 +0.3
596,427 + GFF555 0.55 +0.2
596,427 + GFF555 0.55 -0.2
596,427 + GFF555 0.55 -0.3
596,427 + GFF555 0.55 -0.1
596,428 - GFF555 0.55 -0.9
596,428 - GFF555 0.55 -1.8
596,428 - GFF555 0.55 +0.4
596,560 + GFF555 0.71 -0.6
596,560 + GFF555 0.71 -0.5
596,574 + GFF555 0.73 +0.3
596,574 + GFF555 0.73 +0.7
596,574 + GFF555 0.73 +0.4
596,575 - GFF555 0.73 -0.7
596,575 - GFF555 0.73 -0.2
596,575 - GFF555 0.73 -0.2
596,599 + GFF555 0.76 -1.7
596,599 + GFF555 0.76 -1.1
596,599 + GFF555 0.76 +0.2
596,599 + GFF555 0.76 -0.4
596,600 - GFF555 0.76 -1.2
596,600 - GFF555 0.76 -1.7
596,600 - GFF555 0.76 +0.2
596,643 + GFF555 0.82 -1.3
596,643 + GFF555 0.82 -0.1
596,644 - GFF555 0.82 +0.4
596,691 + GFF555 0.88 -0.1
596,691 + GFF555 0.88 -0.2
596,692 - GFF555 0.88 +0.2
596,692 - GFF555 0.88 -1.9
596,765 + -0.4
596,805 - -0.1
596,831 - -0.2
596,831 - +0.6
596,844 + +1.3
596,845 - -0.0
596,863 + -0.7
596,863 + -0.3
596,864 - -1.1
596,864 - -0.2
596,871 - +0.0
596,886 + +0.3
596,886 + -1.2
596,886 + +0.1
596,886 + -1.1
596,886 + +1.3
596,886 + +0.5
596,886 + -0.6
596,886 + +0.3
596,886 + -1.4
596,886 + +0.7
596,886 + +0.3
596,886 + -0.5
596,887 - +2.3
596,887 - +0.6
596,887 - -0.3
596,887 - -1.6
596,887 - -0.3
596,887 - -1.3
596,887 - -0.6
596,887 - +0.3
596,887 - +1.0
596,935 + GFF556 0.11 -0.1
596,935 + GFF556 0.11 +0.8
596,936 - GFF556 0.11 -0.7
596,952 + GFF556 0.14 -0.3
597,090 + GFF556 0.37 -0.3
597,090 + GFF556 0.37 -0.1
597,090 + GFF556 0.37 +1.3
597,090 + GFF556 0.37 -0.1
597,090 + GFF556 0.37 +0.7
597,091 - GFF556 0.37 -0.4
597,091 - GFF556 0.37 +0.2
597,091 - GFF556 0.37 +0.7
597,091 - GFF556 0.37 +0.5
597,147 + GFF556 0.46 -0.7
597,147 + GFF556 0.46 +0.2
597,147 + GFF556 0.46 +0.8
597,148 - GFF556 0.46 -1.0
597,148 - GFF556 0.46 -0.1
597,148 - GFF556 0.46 +1.3
597,148 - GFF556 0.46 -0.2
597,231 + GFF556 0.60 -0.1
597,232 - GFF556 0.60 +0.2
597,232 - GFF556 0.60 -0.7
597,232 - GFF556 0.60 -0.6
597,232 - GFF556 0.60 -1.2
597,232 - GFF556 0.60 +0.3
597,232 - GFF556 0.60 +0.4
597,411 + -0.7
597,411 + -0.7
597,411 + +0.1
597,411 + -0.7
597,412 - +0.0
597,412 - -0.9
597,412 - -0.2
597,479 + -0.0
597,479 + +1.0
597,479 + -0.1
597,480 - -0.5
597,480 - -1.4
597,539 + -0.0
597,539 + -0.7
597,539 + -0.3
597,539 + -0.7
597,539 + +0.3
597,539 + +0.7
597,539 + -0.1
597,539 + -0.2
597,539 + +0.3
597,539 + -0.1
597,539 + -0.2
597,539 + +0.5
597,539 + -0.1
597,539 + +0.6
597,540 - -0.5
597,540 - +1.1

Or see this region's nucleotide sequence