Strain Fitness in Variovorax sp. SCN45 around GFF5529

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5527 and GFF5528 are separated by 27 nucleotidesGFF5528 and GFF5529 overlap by 4 nucleotidesGFF5529 and GFF5530 are separated by 18 nucleotides GFF5527 - Asl0046 protein, at 157,777 to 158,292 GFF5527 GFF5528 - Conjugative transfer protein TrbL, at 158,320 to 158,799 GFF5528 GFF5529 - Putative outer membrane protein, at 158,796 to 159,599 GFF5529 GFF5530 - FIG00931903: hypothetical protein, at 159,618 to 160,655 GFF5530 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.936 kb on + strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 157.937 kb on - strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.119 kb on + strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.120 kb on - strand, within GFF5527at 158.266 kb on - strandat 158.290 kb on + strandat 158.290 kb on + strandat 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.593 kb on + strand, within GFF5528at 158.594 kb on - strand, within GFF5528at 158.594 kb on - strand, within GFF5528at 158.594 kb on - strand, within GFF5528at 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.779 kb on + strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 158.780 kb on - strandat 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.012 kb on + strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.013 kb on - strand, within GFF5529at 159.024 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.045 kb on + strand, within GFF5529at 159.046 kb on - strand, within GFF5529at 159.046 kb on - strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.117 kb on + strand, within GFF5529at 159.118 kb on - strand, within GFF5529at 159.163 kb on - strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.264 kb on + strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.265 kb on - strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.279 kb on + strand, within GFF5529at 159.280 kb on - strand, within GFF5529at 159.280 kb on - strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.297 kb on + strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.298 kb on - strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.402 kb on + strand, within GFF5529at 159.424 kb on + strand, within GFF5529at 159.424 kb on + strand, within GFF5529at 159.425 kb on - strand, within GFF5529at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.856 kb on + strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 159.857 kb on - strand, within GFF5530at 160.137 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.239 kb on + strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.240 kb on - strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.305 kb on + strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.306 kb on - strand, within GFF5530at 160.317 kb on + strand, within GFF5530at 160.317 kb on + strand, within GFF5530at 160.318 kb on - strand, within GFF5530at 160.318 kb on - strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.326 kb on + strand, within GFF5530at 160.327 kb on - strand, within GFF5530at 160.327 kb on - strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.335 kb on + strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.336 kb on - strand, within GFF5530at 160.375 kb on - strand, within GFF5530at 160.375 kb on - strand, within GFF5530at 160.398 kb on + strand, within GFF5530at 160.398 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.461 kb on + strand, within GFF5530at 160.462 kb on - strand, within GFF5530at 160.462 kb on - strand, within GFF5530at 160.462 kb on - strand, within GFF5530

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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157,936 + GFF5527 0.31 -1.0
157,936 + GFF5527 0.31 -0.9
157,936 + GFF5527 0.31 -0.8
157,936 + GFF5527 0.31 -1.2
157,936 + GFF5527 0.31 +0.3
157,936 + GFF5527 0.31 +0.6
157,936 + GFF5527 0.31 -0.5
157,936 + GFF5527 0.31 +0.3
157,936 + GFF5527 0.31 +0.9
157,936 + GFF5527 0.31 -1.0
157,936 + GFF5527 0.31 +0.5
157,936 + GFF5527 0.31 +0.4
157,936 + GFF5527 0.31 -0.3
157,936 + GFF5527 0.31 -0.5
157,936 + GFF5527 0.31 +0.6
157,936 + GFF5527 0.31 -0.1
157,937 - GFF5527 0.31 -0.9
157,937 - GFF5527 0.31 -1.2
157,937 - GFF5527 0.31 -1.7
157,937 - GFF5527 0.31 +0.2
157,937 - GFF5527 0.31 -1.1
157,937 - GFF5527 0.31 -0.2
158,119 + GFF5527 0.66 -0.2
158,119 + GFF5527 0.66 -1.0
158,119 + GFF5527 0.66 -1.3
158,119 + GFF5527 0.66 +1.2
158,119 + GFF5527 0.66 -0.5
158,119 + GFF5527 0.66 +2.2
158,119 + GFF5527 0.66 +1.6
158,119 + GFF5527 0.66 +0.7
158,119 + GFF5527 0.66 -0.2
158,119 + GFF5527 0.66 -2.7
158,119 + GFF5527 0.66 -1.2
158,119 + GFF5527 0.66 +1.3
158,119 + GFF5527 0.66 -0.1
158,119 + GFF5527 0.66 -0.2
158,119 + GFF5527 0.66 -0.8
158,119 + GFF5527 0.66 +0.6
158,119 + GFF5527 0.66 -0.6
158,119 + GFF5527 0.66 -0.6
158,119 + GFF5527 0.66 -1.1
158,119 + GFF5527 0.66 +0.9
158,119 + GFF5527 0.66 -1.1
158,120 - GFF5527 0.66 -0.3
158,120 - GFF5527 0.66 +3.5
158,120 - GFF5527 0.66 -0.5
158,120 - GFF5527 0.66 -0.5
158,120 - GFF5527 0.66 +1.6
158,120 - GFF5527 0.66 -1.4
158,120 - GFF5527 0.66 -0.0
158,120 - GFF5527 0.66 +0.4
158,120 - GFF5527 0.66 -0.1
158,120 - GFF5527 0.66 +0.6
158,120 - GFF5527 0.66 -2.3
158,120 - GFF5527 0.66 -0.3
158,120 - GFF5527 0.66 -0.1
158,120 - GFF5527 0.66 +1.8
158,120 - GFF5527 0.66 -0.5
158,120 - GFF5527 0.66 -0.3
158,120 - GFF5527 0.66 -0.3
158,120 - GFF5527 0.66 +0.1
158,120 - GFF5527 0.66 -0.6
158,120 - GFF5527 0.66 +0.2
158,120 - GFF5527 0.66 -0.2
158,266 - +0.8
158,290 + -0.3
158,290 + -0.5
158,593 + GFF5528 0.57 +0.0
158,593 + GFF5528 0.57 -0.1
158,593 + GFF5528 0.57 -0.9
158,593 + GFF5528 0.57 +0.5
158,593 + GFF5528 0.57 -0.4
158,593 + GFF5528 0.57 +0.9
158,593 + GFF5528 0.57 -0.4
158,593 + GFF5528 0.57 -0.4
158,593 + GFF5528 0.57 -0.0
158,593 + GFF5528 0.57 +0.9
158,593 + GFF5528 0.57 -1.9
158,594 - GFF5528 0.57 +0.5
158,594 - GFF5528 0.57 -0.0
158,594 - GFF5528 0.57 -0.3
158,779 + +0.0
158,779 + +0.8
158,779 + -0.2
158,779 + +0.5
158,779 + +0.2
158,780 - -0.1
158,780 - -0.3
158,780 - -0.9
158,780 - -1.1
158,780 - +0.2
159,012 + GFF5529 0.27 +0.9
159,012 + GFF5529 0.27 -1.0
159,012 + GFF5529 0.27 -1.5
159,012 + GFF5529 0.27 +0.5
159,012 + GFF5529 0.27 -0.3
159,012 + GFF5529 0.27 -0.2
159,012 + GFF5529 0.27 -0.3
159,012 + GFF5529 0.27 +1.2
159,013 - GFF5529 0.27 +0.1
159,013 - GFF5529 0.27 +0.2
159,013 - GFF5529 0.27 -0.5
159,013 - GFF5529 0.27 -0.8
159,013 - GFF5529 0.27 +0.9
159,013 - GFF5529 0.27 +0.0
159,024 + GFF5529 0.28 +0.5
159,045 + GFF5529 0.31 -0.0
159,045 + GFF5529 0.31 -0.4
159,045 + GFF5529 0.31 -0.5
159,045 + GFF5529 0.31 +0.3
159,045 + GFF5529 0.31 +2.4
159,045 + GFF5529 0.31 +0.0
159,045 + GFF5529 0.31 -0.5
159,045 + GFF5529 0.31 +0.8
159,045 + GFF5529 0.31 -0.6
159,046 - GFF5529 0.31 +1.0
159,046 - GFF5529 0.31 +1.1
159,117 + GFF5529 0.40 -0.2
159,117 + GFF5529 0.40 +0.0
159,117 + GFF5529 0.40 +0.5
159,118 - GFF5529 0.40 -0.5
159,163 - GFF5529 0.46 +1.6
159,264 + GFF5529 0.58 +0.6
159,264 + GFF5529 0.58 -2.6
159,264 + GFF5529 0.58 +0.4
159,264 + GFF5529 0.58 -1.5
159,265 - GFF5529 0.58 +0.7
159,265 - GFF5529 0.58 -0.7
159,265 - GFF5529 0.58 +0.2
159,279 + GFF5529 0.60 -0.2
159,279 + GFF5529 0.60 +0.0
159,279 + GFF5529 0.60 -0.6
159,279 + GFF5529 0.60 -0.6
159,279 + GFF5529 0.60 -0.1
159,279 + GFF5529 0.60 -0.7
159,279 + GFF5529 0.60 +0.3
159,279 + GFF5529 0.60 -0.8
159,280 - GFF5529 0.60 +0.5
159,280 - GFF5529 0.60 -0.4
159,297 + GFF5529 0.62 +0.4
159,297 + GFF5529 0.62 +1.1
159,297 + GFF5529 0.62 -0.7
159,297 + GFF5529 0.62 +0.2
159,298 - GFF5529 0.62 -0.3
159,298 - GFF5529 0.62 -1.3
159,298 - GFF5529 0.62 -0.3
159,298 - GFF5529 0.62 +0.7
159,298 - GFF5529 0.62 -0.1
159,298 - GFF5529 0.62 +0.3
159,298 - GFF5529 0.62 -0.4
159,402 + GFF5529 0.75 -0.6
159,402 + GFF5529 0.75 -2.6
159,402 + GFF5529 0.75 -0.3
159,424 + GFF5529 0.78 +0.3
159,424 + GFF5529 0.78 -1.1
159,425 - GFF5529 0.78 +1.1
159,856 + GFF5530 0.23 -0.2
159,856 + GFF5530 0.23 -0.0
159,856 + GFF5530 0.23 -1.3
159,856 + GFF5530 0.23 +0.3
159,856 + GFF5530 0.23 -0.3
159,856 + GFF5530 0.23 -0.8
159,857 - GFF5530 0.23 +0.3
159,857 - GFF5530 0.23 -0.4
159,857 - GFF5530 0.23 -0.9
159,857 - GFF5530 0.23 -1.3
159,857 - GFF5530 0.23 +0.9
160,137 + GFF5530 0.50 -1.3
160,239 + GFF5530 0.60 +0.1
160,239 + GFF5530 0.60 -0.0
160,239 + GFF5530 0.60 +0.9
160,239 + GFF5530 0.60 -0.9
160,239 + GFF5530 0.60 -0.8
160,240 - GFF5530 0.60 +0.9
160,240 - GFF5530 0.60 -0.8
160,240 - GFF5530 0.60 +1.9
160,240 - GFF5530 0.60 -1.5
160,240 - GFF5530 0.60 +0.1
160,305 + GFF5530 0.66 +0.2
160,305 + GFF5530 0.66 +0.6
160,305 + GFF5530 0.66 -0.2
160,306 - GFF5530 0.66 -1.3
160,306 - GFF5530 0.66 +0.7
160,306 - GFF5530 0.66 -0.4
160,317 + GFF5530 0.67 -1.3
160,317 + GFF5530 0.67 +0.9
160,318 - GFF5530 0.67 +2.9
160,318 - GFF5530 0.67 -0.5
160,326 + GFF5530 0.68 +0.3
160,326 + GFF5530 0.68 -2.6
160,326 + GFF5530 0.68 -2.8
160,326 + GFF5530 0.68 +0.4
160,326 + GFF5530 0.68 +0.3
160,327 - GFF5530 0.68 -0.8
160,327 - GFF5530 0.68 -0.1
160,335 + GFF5530 0.69 -1.3
160,335 + GFF5530 0.69 -0.5
160,335 + GFF5530 0.69 +0.9
160,335 + GFF5530 0.69 -0.4
160,336 - GFF5530 0.69 -0.0
160,336 - GFF5530 0.69 +0.9
160,336 - GFF5530 0.69 -0.5
160,336 - GFF5530 0.69 -0.7
160,336 - GFF5530 0.69 -0.9
160,336 - GFF5530 0.69 -0.5
160,336 - GFF5530 0.69 -0.2
160,336 - GFF5530 0.69 -0.9
160,336 - GFF5530 0.69 +1.0
160,336 - GFF5530 0.69 -0.5
160,375 - GFF5530 0.73 -0.1
160,375 - GFF5530 0.73 -0.9
160,398 + GFF5530 0.75 +0.5
160,398 + GFF5530 0.75 +0.4
160,461 + GFF5530 0.81 -0.5
160,461 + GFF5530 0.81 -1.2
160,461 + GFF5530 0.81 -0.8
160,461 + GFF5530 0.81 +1.0
160,462 - GFF5530 0.81 -1.4
160,462 - GFF5530 0.81 -0.5
160,462 - GFF5530 0.81 -1.0

Or see this region's nucleotide sequence