Strain Fitness in Variovorax sp. SCN45 around GFF5496

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
126,267	+		GFF5494	0.39	+1.3
126,267	+		GFF5494	0.39	-0.2
126,267	+		GFF5494	0.39	-0.5
126,267	+		GFF5494	0.39	+0.5
126,267	+		GFF5494	0.39	-0.1
126,267	+		GFF5494	0.39	+0.9
126,267	+		GFF5494	0.39	+0.2
126,267	+		GFF5494	0.39	+0.1
126,268	-		GFF5494	0.39	-0.1
126,268	-		GFF5494	0.39	+0.4
126,268	-		GFF5494	0.39	+0.7
126,268	-		GFF5494	0.39	-0.9
126,268	-		GFF5494	0.39	-0.3
126,268	-		GFF5494	0.39	+0.9
126,268	-		GFF5494	0.39	-0.7
126,309	+		GFF5494	0.45	-0.9
126,309	+		GFF5494	0.45	-0.3
126,309	+		GFF5494	0.45	+0.1
126,309	+		GFF5494	0.45	+0.1
126,309	+		GFF5494	0.45	-0.0
126,309	+		GFF5494	0.45	-0.6
126,310	-		GFF5494	0.45	+0.2
126,310	-		GFF5494	0.45	-0.7
126,310	-		GFF5494	0.45	-0.6
126,310	-		GFF5494	0.45	+0.2
126,310	-		GFF5494	0.45	-0.1
126,310	-		GFF5494	0.45	+0.4
126,310	-		GFF5494	0.45	+0.3
126,330	+		GFF5494	0.48	-0.4
126,330	+		GFF5494	0.48	+0.1
126,330	+		GFF5494	0.48	-1.5
126,330	+		GFF5494	0.48	-0.5
126,330	+		GFF5494	0.48	-0.4
126,330	+		GFF5494	0.48	+1.2
126,330	+		GFF5494	0.48	+0.1
126,330	+		GFF5494	0.48	-0.5
126,330	+		GFF5494	0.48	-0.1
126,330	+		GFF5494	0.48	-0.7
126,330	+		GFF5494	0.48	-0.3
126,330	+		GFF5494	0.48	+0.9
126,330	+		GFF5494	0.48	+0.6
126,330	+		GFF5494	0.48	-0.5
126,330	+		GFF5494	0.48	+1.2
126,330	+		GFF5494	0.48	-0.3
126,330	+		GFF5494	0.48	-0.2
126,330	+		GFF5494	0.48	-0.2
126,330	+		GFF5494	0.48	-0.4
126,330	+		GFF5494	0.48	-0.2
126,330	+		GFF5494	0.48	+0.1
126,330	+		GFF5494	0.48	-0.6
126,331	-		GFF5494	0.48	-0.3
126,331	-		GFF5494	0.48	+0.1
126,331	-		GFF5494	0.48	+0.2
126,331	-		GFF5494	0.48	-0.2
126,331	-		GFF5494	0.48	-1.7
126,331	-		GFF5494	0.48	+0.7
126,331	-		GFF5494	0.48	-0.5
126,331	-		GFF5494	0.48	-1.4
126,331	-		GFF5494	0.48	-0.1
126,331	-		GFF5494	0.48	-0.2
126,331	-		GFF5494	0.48	-1.1
126,331	-		GFF5494	0.48	-0.1
126,331	-		GFF5494	0.48	-0.5
126,331	-		GFF5494	0.48	-1.4
126,331	-		GFF5494	0.48	+1.4
126,331	-		GFF5494	0.48	-0.4
126,331	-		GFF5494	0.48	+0.3
126,331	-		GFF5494	0.48	-0.6
126,331	-		GFF5494	0.48	+0.1
126,331	-		GFF5494	0.48	-0.5
126,331	-		GFF5494	0.48	+0.1
126,331	-		GFF5494	0.48	-0.5
126,331	-		GFF5494	0.48	+0.6
126,351	+		GFF5494	0.51	-0.8
126,351	+		GFF5494	0.51	-0.8
126,351	+		GFF5494	0.51	+1.9
126,351	+		GFF5494	0.51	-0.8
126,351	+		GFF5494	0.51	+0.3
126,352	-		GFF5494	0.51	-0.8
126,352	-		GFF5494	0.51	+1.4
126,399	+		GFF5494	0.57	-0.7
126,399	+		GFF5494	0.57	-0.6
126,399	+		GFF5494	0.57	+0.3
126,399	+		GFF5494	0.57	-0.1
126,399	+		GFF5494	0.57	-0.6
126,399	+		GFF5494	0.57	+0.6
126,399	+		GFF5494	0.57	-0.5
126,399	+		GFF5494	0.57	-0.7
126,399	+		GFF5494	0.57	+0.2
126,400	-		GFF5494	0.57	-0.1
126,400	-		GFF5494	0.57	-1.0
126,400	-		GFF5494	0.57	-0.5
126,400	-		GFF5494	0.57	-1.2
126,400	-		GFF5494	0.57	-0.4
126,400	-		GFF5494	0.57	-1.0
126,400	-		GFF5494	0.57	-2.3
126,400	-		GFF5494	0.57	+0.9
126,400	-		GFF5494	0.57	+0.7
126,400	-		GFF5494	0.57	-2.1
126,400	-		GFF5494	0.57	+0.8
126,414	+		GFF5494	0.59	-1.3
126,414	+		GFF5494	0.59	-0.2
126,414	+		GFF5494	0.59	-0.8
126,414	+		GFF5494	0.59	-1.4
126,414	+		GFF5494	0.59	-0.3
126,414	+		GFF5494	0.59	+0.2
126,414	+		GFF5494	0.59	-0.1
126,414	+		GFF5494	0.59	+0.3
126,415	-		GFF5494	0.59	+1.3
126,415	-		GFF5494	0.59	-1.7
126,415	-		GFF5494	0.59	-1.7
126,415	-		GFF5494	0.59	-0.2
126,415	-		GFF5494	0.59	-0.2
126,415	-		GFF5494	0.59	+2.2
126,415	-		GFF5494	0.59	-1.3
126,415	-		GFF5494	0.59	+1.9
126,415	-		GFF5494	0.59	-0.4
126,415	-		GFF5494	0.59	-0.1
126,475	+		GFF5494	0.67	-1.3
126,603	+		GFF5494	0.85	+0.6
126,603	+		GFF5494	0.85	-0.2
126,946	+		GFF5495	0.40	-0.7
126,946	+		GFF5495	0.40	-0.1
126,946	+		GFF5495	0.40	-1.5
126,946	+		GFF5495	0.40	-0.1
126,947	-		GFF5495	0.40	-0.1
126,947	-		GFF5495	0.40	+0.1
126,947	-		GFF5495	0.40	+0.2
127,039	+		GFF5495	0.67	-0.2
127,039	+		GFF5495	0.67	-0.9
127,040	-		GFF5495	0.68	+1.1
127,040	-		GFF5495	0.68	+0.2
127,040	-		GFF5495	0.68	-0.7
127,040	-		GFF5495	0.68	-0.9
127,040	-		GFF5495	0.68	-1.4
127,040	-		GFF5495	0.68	+1.1
127,040	-		GFF5495	0.68	+0.7
127,040	-		GFF5495	0.68	+1.9
127,040	-		GFF5495	0.68	+0.1
127,063	+		GFF5495	0.74	+0.1
127,063	+		GFF5495	0.74	+1.2
127,063	+		GFF5495	0.74	+0.4
127,063	+		GFF5495	0.74	+0.0
127,064	-		GFF5495	0.75	-0.0
127,064	-		GFF5495	0.75	-0.2
127,064	-		GFF5495	0.75	-0.5
127,064	-		GFF5495	0.75	-1.3
127,064	-		GFF5495	0.75	+0.6
127,064	-		GFF5495	0.75	+0.4
127,064	-		GFF5495	0.75	-0.6
127,064	-		GFF5495	0.75	+0.5
127,066	+		GFF5495	0.75	+1.3
127,066	+		GFF5495	0.75	-1.0
127,066	+		GFF5495	0.75	-0.0
127,066	+		GFF5495	0.75	-1.3
127,066	+		GFF5495	0.75	-0.2
127,066	+		GFF5495	0.75	-1.0
127,066	+		GFF5495	0.75	+1.0
127,066	+		GFF5495	0.75	+0.6
127,066	+		GFF5495	0.75	-0.3
127,066	+		GFF5495	0.75	+0.1
127,066	+		GFF5495	0.75	+0.2
127,066	+		GFF5495	0.75	-0.5
127,066	+		GFF5495	0.75	-0.6
127,066	+		GFF5495	0.75	+0.8
127,066	+		GFF5495	0.75	-1.9
127,067	-		GFF5495	0.76	-0.1
127,067	-		GFF5495	0.76	-0.3
127,067	-		GFF5495	0.76	+1.5
127,067	-		GFF5495	0.76	+0.6
127,067	-		GFF5495	0.76	-0.2
127,067	-		GFF5495	0.76	+0.4
127,067	-		GFF5495	0.76	-1.3
127,067	-		GFF5495	0.76	+0.4
127,067	-		GFF5495	0.76	-0.1
127,067	-		GFF5495	0.76	-0.1
127,067	-		GFF5495	0.76	-0.5
127,067	-		GFF5495	0.76	+0.3
127,067	-		GFF5495	0.76	-0.0
127,067	-		GFF5495	0.76	+0.0
127,067	-		GFF5495	0.76	-1.1
127,067	-		GFF5495	0.76	-1.1
127,067	-		GFF5495	0.76	+0.2
127,067	-		GFF5495	0.76	-0.4
127,067	-		GFF5495	0.76	-1.3
127,067	-		GFF5495	0.76	+0.1
127,067	-		GFF5495	0.76	+0.6
127,067	-		GFF5495	0.76	+0.1
127,069	+		GFF5495	0.76	-0.1
127,069	+		GFF5495	0.76	+0.9
127,069	+		GFF5495	0.76	+1.3
127,069	+		GFF5495	0.76	-0.8
127,069	+		GFF5495	0.76	-0.5
127,070	-		GFF5495	0.76	+0.2
127,070	-		GFF5495	0.76	+1.3
127,070	-		GFF5495	0.76	+0.8
127,070	-		GFF5495	0.76	-0.2
127,070	-		GFF5495	0.76	+0.6
127,070	-		GFF5495	0.76	-0.1
127,070	-		GFF5495	0.76	-0.1
127,070	-		GFF5495	0.76	-0.8
127,070	-		GFF5495	0.76	-0.5
127,070	-		GFF5495	0.76	-0.7
127,070	-		GFF5495	0.76	+0.3
127,070	-		GFF5495	0.76	+0.3
127,070	-		GFF5495	0.76	-0.8
127,117	+				+1.0
127,117	+				-0.7
127,118	-				-0.6
127,118	-				+0.4
127,147	+				+0.1
127,147	+				-0.0
127,147	+				+0.0
127,148	-				-0.2
127,148	-				-0.5
127,148	-				-0.9
127,148	-				+0.3
127,229	+				+0.7
127,229	+				+0.9
127,229	+				-0.1
127,229	+				+0.5
127,229	+				-0.4
127,229	+				-0.8
127,229	+				+1.2
127,229	+				-0.2
127,229	+				-0.1
127,229	+				-1.7
127,229	+				-0.3
127,229	+				+0.6
127,229	+				+1.0
127,229	+				-0.1
127,229	+				-0.8
127,229	+				-0.2
127,230	-				+0.9
127,230	-				-0.5
127,230	-				+0.1
127,230	-				-0.1
127,230	-				-0.0
127,230	-				-1.1
127,230	-				+0.7
127,230	-				+1.0
127,230	-				+1.1
127,230	-				-1.1
127,230	-				-0.6
127,230	-				-0.7
127,230	-				-0.9
127,230	-				-0.1
127,230	-				+0.9
127,385	+		GFF5496	0.23	-0.7
127,385	+		GFF5496	0.23	+1.4
127,385	+		GFF5496	0.23	-0.5
127,385	+		GFF5496	0.23	-0.8
127,386	-		GFF5496	0.23	+0.3
127,386	-		GFF5496	0.23	+0.2
127,386	-		GFF5496	0.23	+0.3
127,580	+		GFF5496	0.43	+0.2
127,580	+		GFF5496	0.43	-2.8
127,580	+		GFF5496	0.43	-0.3
127,580	+		GFF5496	0.43	+1.3
127,580	+		GFF5496	0.43	-0.9
127,580	+		GFF5496	0.43	+0.1
127,580	+		GFF5496	0.43	-0.3
127,580	+		GFF5496	0.43	-1.9
127,580	+		GFF5496	0.43	-1.1
127,580	+		GFF5496	0.43	+0.7
127,580	+		GFF5496	0.43	-0.4
127,580	+		GFF5496	0.43	+0.4
127,581	-		GFF5496	0.43	-0.8
127,581	-		GFF5496	0.43	-0.3
127,581	-		GFF5496	0.43	-0.1
127,581	-		GFF5496	0.43	+0.6
127,581	-		GFF5496	0.43	-2.1
127,581	-		GFF5496	0.43	-0.0
127,581	-		GFF5496	0.43	+0.4
127,581	-		GFF5496	0.43	+0.6
127,581	-		GFF5496	0.43	+0.6
127,581	-		GFF5496	0.43	+1.9
127,581	-		GFF5496	0.43	-0.1
127,581	-		GFF5496	0.43	-0.1
127,581	-		GFF5496	0.43	-0.9
127,581	-		GFF5496	0.43	+0.3
127,581	-		GFF5496	0.43	+0.2
127,667	+		GFF5496	0.52	-0.3
127,667	+		GFF5496	0.52	-1.5
127,667	+		GFF5496	0.52	+0.6
127,667	+		GFF5496	0.52	+0.7
127,667	+		GFF5496	0.52	+0.3
127,667	+		GFF5496	0.52	-0.8
127,667	+		GFF5496	0.52	-1.0
127,667	+		GFF5496	0.52	-0.2
127,667	+		GFF5496	0.52	-0.0
127,667	+		GFF5496	0.52	-1.8
127,667	+		GFF5496	0.52	-0.4
127,667	+		GFF5496	0.52	+1.5
127,667	+		GFF5496	0.52	+0.3
127,667	+		GFF5496	0.52	-0.2
127,667	+		GFF5496	0.52	-0.1
127,667	+		GFF5496	0.52	-1.0
127,667	+		GFF5496	0.52	-0.2
127,667	+		GFF5496	0.52	+0.9
127,667	+		GFF5496	0.52	-2.1
127,667	+		GFF5496	0.52	+0.3
127,667	+		GFF5496	0.52	+0.3
127,667	+		GFF5496	0.52	-0.1
127,668	-		GFF5496	0.52	+0.7
127,668	-		GFF5496	0.52	-2.1
127,668	-		GFF5496	0.52	-0.0
127,668	-		GFF5496	0.52	-0.5
127,668	-		GFF5496	0.52	+0.5
127,668	-		GFF5496	0.52	+0.4
127,668	-		GFF5496	0.52	+0.1
127,668	-		GFF5496	0.52	-1.0
127,668	-		GFF5496	0.52	+0.8
127,668	-		GFF5496	0.52	+0.3
127,668	-		GFF5496	0.52	-1.8
127,668	-		GFF5496	0.52	-1.0
127,668	-		GFF5496	0.52	+1.6
127,668	-		GFF5496	0.52	+0.9
127,668	-		GFF5496	0.52	-0.8
127,668	-		GFF5496	0.52	+0.3
127,668	-		GFF5496	0.52	+0.2
127,697	+		GFF5496	0.55	+0.5
127,697	+		GFF5496	0.55	+0.6
127,697	+		GFF5496	0.55	+0.0
127,698	-		GFF5496	0.55	+0.5
127,698	-		GFF5496	0.55	+0.9
127,698	-		GFF5496	0.55	+1.2
127,698	-		GFF5496	0.55	+0.8
127,698	-		GFF5496	0.55	+0.4
127,698	-		GFF5496	0.55	+0.7
127,698	-		GFF5496	0.55	-0.4
127,781	+		GFF5496	0.64	-0.1
127,781	+		GFF5496	0.64	-1.3
127,781	+		GFF5496	0.64	-0.5
127,781	+		GFF5496	0.64	+0.2
127,781	+		GFF5496	0.64	+0.3
127,781	+		GFF5496	0.64	+0.9
127,781	+		GFF5496	0.64	+0.1
127,781	+		GFF5496	0.64	+0.9
127,781	+		GFF5496	0.64	-0.6
127,781	+		GFF5496	0.64	+0.3
127,781	+		GFF5496	0.64	+2.5
127,781	+		GFF5496	0.64	+0.2
127,781	+		GFF5496	0.64	-0.8
127,781	+		GFF5496	0.64	+0.9
127,781	+		GFF5496	0.64	-0.4
127,781	+		GFF5496	0.64	+0.4
127,781	+		GFF5496	0.64	-1.0
127,781	+		GFF5496	0.64	-1.0
127,781	+		GFF5496	0.64	+1.2
127,781	+		GFF5496	0.64	+0.6
127,781	+		GFF5496	0.64	+0.5
127,782	-		GFF5496	0.64	-0.7
127,782	-		GFF5496	0.64	-0.8
127,782	-		GFF5496	0.64	+0.1
127,782	-		GFF5496	0.64	-0.4
127,782	-		GFF5496	0.64	-0.8
127,782	-		GFF5496	0.64	-0.3
127,782	-		GFF5496	0.64	+0.5
127,782	-		GFF5496	0.64	-0.2
127,782	-		GFF5496	0.64	-0.2
127,782	-		GFF5496	0.64	-1.3
127,782	-		GFF5496	0.64	-0.2
127,782	-		GFF5496	0.64	-0.9
127,805	+		GFF5496	0.66	-0.0
127,805	+		GFF5496	0.66	+0.7
127,805	+		GFF5496	0.66	-0.3
127,805	+		GFF5496	0.66	-0.1
127,805	+		GFF5496	0.66	+0.5
127,805	+		GFF5496	0.66	+0.6
127,806	-		GFF5496	0.66	-0.0
127,806	-		GFF5496	0.66	+0.3
127,806	-		GFF5496	0.66	-0.4
127,806	-		GFF5496	0.66	-0.6
127,806	-		GFF5496	0.66	+0.2
127,806	-		GFF5496	0.66	-0.6
127,806	-		GFF5496	0.66	-0.3
127,806	-		GFF5496	0.66	+0.4
127,806	-		GFF5496	0.66	+0.8
127,806	-		GFF5496	0.66	+0.7
127,808	+		GFF5496	0.67	-0.3
127,871	+		GFF5496	0.73	+0.3
127,872	-		GFF5496	0.73	-0.1
127,872	-		GFF5496	0.73	-0.7
128,055	-				+0.1
128,270	+				+0.3
128,270	+				+1.9
128,270	+				-0.3
128,270	+				-0.1
128,271	-				+0.2
128,271	-				+0.6
128,271	-				-0.3
128,552	+		GFF5497	0.38	+0.2
128,552	+		GFF5497	0.38	+1.2
128,552	+		GFF5497	0.38	+0.0
128,552	+		GFF5497	0.38	+0.1
128,552	+		GFF5497	0.38	-0.3
128,552	+		GFF5497	0.38	-0.4
128,552	+		GFF5497	0.38	+0.5
128,553	-		GFF5497	0.38	-0.7
128,553	-		GFF5497	0.38	+0.7
128,553	-		GFF5497	0.38	+2.3
128,567	+		GFF5497	0.39	-0.8
128,568	-		GFF5497	0.39	-0.6
128,568	-		GFF5497	0.39	-0.2
128,918	+		GFF5497	0.75	+0.1
128,918	+		GFF5497	0.75	+0.2
128,918	+		GFF5497	0.75	-0.7
128,919	-		GFF5497	0.75	+0.1
128,919	-		GFF5497	0.75	-1.2
128,919	-		GFF5497	0.75	-0.3
128,919	-		GFF5497	0.75	-0.7
129,074	+				+0.1
129,074	+				-0.9
129,074	+				+0.9
129,074	+				-0.4
129,074	+				-0.4
129,075	-				-1.4
129,075	-				-0.4
129,075	-				+1.5
129,075	-				-0.1
129,075	-				-0.8
129,075	-				-1.0
129,081	-				-1.1