Strain Fitness in Variovorax sp. SCN45 around GFF5435

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
59,156	+		GFF5434	0.37	-0.8
59,157	-		GFF5434	0.37	+0.3
59,194	-		GFF5434	0.40	-0.1
59,197	+		GFF5434	0.40	+0.1
59,197	+		GFF5434	0.40	-0.8
59,197	+		GFF5434	0.40	-0.7
59,197	+		GFF5434	0.40	+0.7
59,197	+		GFF5434	0.40	+0.0
59,197	+		GFF5434	0.40	-2.4
59,197	+		GFF5434	0.40	-0.3
59,197	+		GFF5434	0.40	-0.1
59,198	-		GFF5434	0.40	-0.2
59,198	-		GFF5434	0.40	-0.5
59,198	-		GFF5434	0.40	-0.5
59,198	-		GFF5434	0.40	+0.4
59,605	+		GFF5434	0.72	-0.4
59,605	+		GFF5434	0.72	-0.5
59,606	-		GFF5434	0.72	-0.5
59,606	-		GFF5434	0.72	+0.8
59,614	+		GFF5434	0.73	+0.5
59,615	-		GFF5434	0.73	+1.5
59,615	-		GFF5434	0.73	-0.3
59,615	-		GFF5434	0.73	-0.9
59,615	-		GFF5434	0.73	-1.4
59,615	-		GFF5434	0.73	-0.1
59,615	-		GFF5434	0.73	+2.4
59,615	-		GFF5434	0.73	-0.3
59,881	+				+0.2
59,881	+				+0.2
59,881	+				+0.9
59,882	-				-0.5
59,882	-				-0.0
59,882	-				-1.1
59,882	-				+0.1
59,882	-				+0.2
59,902	+				-1.8
59,902	+				-0.9
59,902	+				-0.3
59,902	+				+0.0
59,902	+				+0.4
59,902	+				+0.9
59,902	+				-0.2
59,902	+				-0.9
59,902	+				+1.5
59,902	+				+0.5
59,902	+				+0.8
59,903	-				-0.8
59,903	-				-0.4
59,903	-				-0.8
59,903	-				+0.9
59,903	-				-1.7
59,903	-				+0.4
59,903	-				-0.4
59,903	-				-1.5
59,903	-				-0.8
59,903	-				+0.2
59,903	-				-0.2
59,903	-				-0.2
59,903	-				+0.3
59,903	-				+0.5
59,903	-				-0.7
59,947	+				+0.7
59,948	-				-0.7
59,948	-				-0.4
59,948	-				+0.3
59,948	-				-0.1
60,004	+				+0.3
60,004	+				-0.0
60,004	+				-0.3
60,005	-				-0.6
60,022	+				-1.2
60,022	+				+0.2
60,022	+				-0.1
60,022	+				-0.1
60,022	+				+0.3
60,022	+				+0.9
60,022	+				+0.5
60,022	+				-0.4
60,022	+				-0.2
60,023	-				-0.6
60,023	-				-0.9
60,023	-				+0.1
60,023	-				+2.3
60,030	+				-0.4
60,030	+				+1.3
60,030	+				+1.7
60,030	+				-1.1
60,030	+				+0.1
60,030	+				-0.1
60,030	+				-0.4
60,030	+				+0.6
60,030	+				-0.7
60,030	+				-1.9
60,030	+				-0.1
60,030	+				-0.4
60,030	+				+0.9
60,030	+				+0.2
60,030	+				-0.4
60,030	+				-0.3
60,030	+				-0.2
60,030	+				+0.6
60,030	+				-0.5
60,031	-				+0.5
60,031	-				-0.7
60,031	-				+0.1
60,031	-				+0.4
60,031	-				+0.1
60,031	-				+0.5
60,031	-				+1.1
60,031	-				+0.6
60,031	-				-0.7
60,067	+				-0.9
60,068	-				-0.3
60,068	-				+0.3
60,068	-				-0.9
60,068	-				-0.4
60,076	+				-1.3
60,076	+				-2.0
60,076	+				-0.5
60,076	+				+0.4
60,076	+				-0.5
60,076	+				+0.7
60,076	+				-0.2
60,076	+				+0.4
60,077	-				-1.3
60,077	-				-2.2
60,077	-				-0.1
60,178	+		GFF5435	0.14	+0.6
60,178	+		GFF5435	0.14	+0.3
60,179	-		GFF5435	0.14	+0.3
60,179	-		GFF5435	0.14	-0.5
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	-0.9
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	-0.3
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.2
60,280	+		GFF5435	0.23	+0.7
60,280	+		GFF5435	0.23	-0.6
60,280	+		GFF5435	0.23	-1.9
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-0.1
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	-1.8
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	+0.2
60,280	+		GFF5435	0.23	+0.7
60,280	+		GFF5435	0.23	-0.1
60,280	+		GFF5435	0.23	+0.6
60,280	+		GFF5435	0.23	+1.9
60,280	+		GFF5435	0.23	+1.9
60,280	+		GFF5435	0.23	-0.5
60,280	+		GFF5435	0.23	-1.1
60,280	+		GFF5435	0.23	+0.4
60,280	+		GFF5435	0.23	+1.2
60,280	+		GFF5435	0.23	-1.1
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	-2.4
60,280	+		GFF5435	0.23	-0.6
60,280	+		GFF5435	0.23	+0.1
60,280	+		GFF5435	0.23	-1.1
60,280	+		GFF5435	0.23	-1.0
60,280	+		GFF5435	0.23	+0.2
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	-0.0
60,280	+		GFF5435	0.23	+0.0
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	-0.4
60,280	+		GFF5435	0.23	-0.7
60,280	+		GFF5435	0.23	-0.3
60,280	+		GFF5435	0.23	+1.2
60,280	+		GFF5435	0.23	+0.3
60,280	+		GFF5435	0.23	-1.5
60,280	+		GFF5435	0.23	+1.1
60,281	-		GFF5435	0.23	-1.0
60,281	-		GFF5435	0.23	-0.3
60,281	-		GFF5435	0.23	-1.1
60,281	-		GFF5435	0.23	-0.4
60,281	-		GFF5435	0.23	-1.5
60,281	-		GFF5435	0.23	-0.3
60,281	-		GFF5435	0.23	-0.5
60,281	-		GFF5435	0.23	-0.9
60,281	-		GFF5435	0.23	-0.1
60,281	-		GFF5435	0.23	+1.1
60,281	-		GFF5435	0.23	-0.3
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	-0.3
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	+0.5
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	+0.4
60,281	-		GFF5435	0.23	+0.3
60,281	-		GFF5435	0.23	-1.1
60,281	-		GFF5435	0.23	-0.9
60,281	-		GFF5435	0.23	+0.8
60,281	-		GFF5435	0.23	-0.0
60,281	-		GFF5435	0.23	-1.8
60,281	-		GFF5435	0.23	+1.3
60,281	-		GFF5435	0.23	-0.7
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	-1.3
60,281	-		GFF5435	0.23	+0.5
60,281	-		GFF5435	0.23	-0.3
60,281	-		GFF5435	0.23	-0.2
60,281	-		GFF5435	0.23	+1.0
60,281	-		GFF5435	0.23	+0.1
60,281	-		GFF5435	0.23	-1.4
60,310	+		GFF5435	0.25	+0.2
60,310	+		GFF5435	0.25	+1.1
60,310	+		GFF5435	0.25	-0.2
60,310	+		GFF5435	0.25	+0.3
60,310	+		GFF5435	0.25	+0.5
60,311	-		GFF5435	0.25	+0.3
60,311	-		GFF5435	0.25	-0.3
60,311	-		GFF5435	0.25	-0.2
60,397	+		GFF5435	0.32	-0.2
60,398	-		GFF5435	0.32	+0.0
60,398	-		GFF5435	0.32	-0.1
60,398	-		GFF5435	0.32	-0.7
60,398	-		GFF5435	0.32	-1.1
60,398	-		GFF5435	0.32	-1.3
60,398	-		GFF5435	0.32	-0.8
60,398	-		GFF5435	0.32	+0.0
60,398	-		GFF5435	0.32	+0.2
60,398	-		GFF5435	0.32	-0.5
60,398	-		GFF5435	0.32	+0.6
60,398	-		GFF5435	0.32	+0.3
60,409	+		GFF5435	0.33	+2.1
60,409	+		GFF5435	0.33	+0.3
60,481	+		GFF5435	0.39	+0.1
60,742	+		GFF5435	0.61	+0.5
60,742	+		GFF5435	0.61	-0.4
60,742	+		GFF5435	0.61	-0.1
60,742	+		GFF5435	0.61	-0.4
60,742	+		GFF5435	0.61	+0.0
60,742	+		GFF5435	0.61	-1.5
60,742	+		GFF5435	0.61	+0.6
60,742	+		GFF5435	0.61	-0.4
60,743	-		GFF5435	0.61	-0.0
60,743	-		GFF5435	0.61	+0.2
60,743	-		GFF5435	0.61	-0.1
60,743	-		GFF5435	0.61	+0.6
60,743	-		GFF5435	0.61	+0.1
60,743	-		GFF5435	0.61	+0.3
60,743	-		GFF5435	0.61	-0.3
60,743	-		GFF5435	0.61	-0.6
60,772	+		GFF5435	0.63	-0.8
60,772	+		GFF5435	0.63	-2.0
60,772	+		GFF5435	0.63	+0.5
60,772	+		GFF5435	0.63	+0.1
60,772	+		GFF5435	0.63	-0.1
60,773	-		GFF5435	0.63	+0.8
60,773	-		GFF5435	0.63	-0.2
60,773	-		GFF5435	0.63	+0.3
60,773	-		GFF5435	0.63	+0.6
60,773	-		GFF5435	0.63	+1.0
60,773	-		GFF5435	0.63	-0.3
60,773	-		GFF5435	0.63	-0.6
60,793	+		GFF5435	0.65	+0.3
60,793	+		GFF5435	0.65	-0.1
60,793	+		GFF5435	0.65	-0.2
60,793	+		GFF5435	0.65	+0.4
60,793	+		GFF5435	0.65	-0.5
60,793	+		GFF5435	0.65	-0.4
60,794	-		GFF5435	0.65	+0.7
60,794	-		GFF5435	0.65	-0.6
60,794	-		GFF5435	0.65	+0.9
60,794	-		GFF5435	0.65	-0.4
60,794	-		GFF5435	0.65	-0.7
60,794	-		GFF5435	0.65	-0.1
60,860	-		GFF5435	0.70	-1.0
60,886	+		GFF5435	0.72	-1.7
60,886	+		GFF5435	0.72	-0.2
60,886	+		GFF5435	0.72	-0.7
60,887	-		GFF5435	0.73	-0.6
60,887	-		GFF5435	0.73	+0.1
60,887	-		GFF5435	0.73	-0.2
60,887	-		GFF5435	0.73	-0.8
60,887	-		GFF5435	0.73	-0.7
60,887	-		GFF5435	0.73	-0.0
60,887	-		GFF5435	0.73	+0.3
60,973	+		GFF5435	0.80	-0.2
60,973	+		GFF5435	0.80	-0.4
60,973	+		GFF5435	0.80	-1.1
60,973	+		GFF5435	0.80	-0.1
60,973	+		GFF5435	0.80	+0.1
60,973	+		GFF5435	0.80	+0.7
60,973	+		GFF5435	0.80	+0.1
60,973	+		GFF5435	0.80	+0.3
60,973	+		GFF5435	0.80	+2.5
60,973	+		GFF5435	0.80	-1.3
60,973	+		GFF5435	0.80	-1.0
60,973	+		GFF5435	0.80	-0.9
60,973	+		GFF5435	0.80	-2.3
60,973	+		GFF5435	0.80	-0.3
60,973	+		GFF5435	0.80	-1.5
60,973	+		GFF5435	0.80	-0.8
60,973	+		GFF5435	0.80	-0.3
60,974	-		GFF5435	0.80	-0.8
60,974	-		GFF5435	0.80	+1.5
60,974	-		GFF5435	0.80	-0.4
60,974	-		GFF5435	0.80	+0.7
60,974	-		GFF5435	0.80	+0.9
60,974	-		GFF5435	0.80	+0.0
60,974	-		GFF5435	0.80	+0.2
60,974	-		GFF5435	0.80	-0.8
60,974	-		GFF5435	0.80	+2.2
60,974	-		GFF5435	0.80	-0.9
60,974	-		GFF5435	0.80	+2.3
60,974	-		GFF5435	0.80	-0.6
60,974	-		GFF5435	0.80	-0.7
60,974	-		GFF5435	0.80	-0.1
60,974	-		GFF5435	0.80	-0.4
60,974	-		GFF5435	0.80	+0.0
60,974	-		GFF5435	0.80	+0.6
60,974	-		GFF5435	0.80	-0.1
60,974	-		GFF5435	0.80	-0.6
60,974	-		GFF5435	0.80	-0.5
61,123	+				+0.2
61,123	+				-0.3
61,123	+				+0.0
61,124	-				-0.6
61,124	-				+0.1
61,575	+		GFF5436	0.45	-1.9
61,575	+		GFF5436	0.45	-1.1
61,576	-		GFF5436	0.45	-0.4
61,576	-		GFF5436	0.45	+0.7
61,596	+		GFF5436	0.47	-0.3
61,596	+		GFF5436	0.47	-0.2
61,596	+		GFF5436	0.47	-0.4
61,596	+		GFF5436	0.47	-0.6
61,596	+		GFF5436	0.47	-0.1
61,597	-		GFF5436	0.48	-2.0
61,597	-		GFF5436	0.48	+0.2
61,597	-		GFF5436	0.48	-1.8
61,597	-		GFF5436	0.48	+0.6
61,597	-		GFF5436	0.48	-0.3
61,597	-		GFF5436	0.48	-1.0
61,597	-		GFF5436	0.48	+0.1
61,646	+		GFF5436	0.54	+0.3
61,646	+		GFF5436	0.54	+0.5
61,647	-		GFF5436	0.54	+0.0
61,647	-		GFF5436	0.54	+0.2
61,647	-		GFF5436	0.54	-1.7
61,671	+		GFF5436	0.57	+1.0
61,698	+		GFF5436	0.60	+0.1
61,698	+		GFF5436	0.60	+0.5
61,698	+		GFF5436	0.60	+0.7
61,699	-		GFF5436	0.60	-1.5
61,699	-		GFF5436	0.60	-0.1
61,699	-		GFF5436	0.60	+0.8
61,699	-		GFF5436	0.60	-0.1
61,699	-		GFF5436	0.60	+0.1
61,699	-		GFF5436	0.60	+0.0
61,717	-		GFF5436	0.63	-1.3
61,920	+		GFF5436	0.88	-0.2
61,920	+		GFF5436	0.88	-0.3
61,920	+		GFF5436	0.88	-0.8
61,921	-		GFF5436	0.88	-0.4
61,921	-		GFF5436	0.88	-1.3
61,921	-		GFF5436	0.88	+0.1
61,929	+		GFF5436	0.89	-2.0
61,930	-		GFF5436	0.89	+0.6
61,930	-		GFF5436	0.89	-0.7
62,114	+				+1.0
62,114	+				-0.6
62,114	+				+3.5
62,115	-				-0.5
62,115	-				+1.2
62,115	-				-1.0
62,115	-				-0.2
62,216	+		GFF5437	0.15	-0.9
62,216	+		GFF5437	0.15	-0.4
62,216	+		GFF5437	0.15	-0.5
62,216	+		GFF5437	0.15	-0.4
62,217	-		GFF5437	0.15	-0.4
62,217	-		GFF5437	0.15	-0.9
62,217	-		GFF5437	0.15	-0.2
62,217	-		GFF5437	0.15	-0.5
62,217	-		GFF5437	0.15	-0.6
62,217	-		GFF5437	0.15	-0.6
62,217	-		GFF5437	0.15	+0.9
62,217	-		GFF5437	0.15	-0.1
62,217	-		GFF5437	0.15	+0.3
62,217	-		GFF5437	0.15	+0.6
62,217	-		GFF5437	0.15	+0.7
62,217	-		GFF5437	0.15	-0.6
62,217	-		GFF5437	0.15	-0.2