Strain Fitness in Variovorax sp. SCN45 around GFF5353

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5352 and GFF5353 are separated by 21 nucleotidesGFF5353 and GFF5354 overlap by 4 nucleotides GFF5352 - Split AAA-ATPase protein PA0787, at 229,165 to 230,337 GFF5352 GFF5353 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 230,359 to 231,267 GFF5353 GFF5354 - C4-dicarboxylate transport protein, at 231,264 to 232,571 GFF5354 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 229.468 kb on - strand, within GFF5352at 229.489 kb on + strand, within GFF5352at 229.489 kb on + strand, within GFF5352at 229.489 kb on + strand, within GFF5352at 229.489 kb on + strand, within GFF5352at 229.490 kb on - strand, within GFF5352at 229.490 kb on - strand, within GFF5352at 229.490 kb on - strand, within GFF5352at 229.490 kb on - strand, within GFF5352at 229.566 kb on + strand, within GFF5352at 229.566 kb on + strand, within GFF5352at 229.567 kb on - strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.768 kb on + strand, within GFF5352at 229.769 kb on - strand, within GFF5352at 229.769 kb on - strand, within GFF5352at 230.047 kb on + strand, within GFF5352at 230.047 kb on + strand, within GFF5352at 230.047 kb on + strand, within GFF5352at 230.047 kb on + strand, within GFF5352at 230.048 kb on - strand, within GFF5352at 230.048 kb on - strand, within GFF5352at 230.360 kb on + strandat 230.360 kb on + strandat 230.360 kb on + strandat 230.361 kb on - strandat 230.361 kb on - strandat 230.361 kb on - strandat 230.465 kb on + strand, within GFF5353at 230.465 kb on + strand, within GFF5353at 230.465 kb on + strand, within GFF5353at 230.465 kb on + strand, within GFF5353at 230.465 kb on + strand, within GFF5353at 230.466 kb on - strand, within GFF5353at 230.466 kb on - strand, within GFF5353at 230.466 kb on - strand, within GFF5353at 230.549 kb on + strand, within GFF5353at 230.549 kb on + strand, within GFF5353at 230.550 kb on - strand, within GFF5353at 230.550 kb on - strand, within GFF5353at 230.550 kb on - strand, within GFF5353at 230.550 kb on - strand, within GFF5353at 230.550 kb on - strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.570 kb on + strand, within GFF5353at 230.571 kb on - strand, within GFF5353at 230.571 kb on - strand, within GFF5353at 230.571 kb on - strand, within GFF5353at 230.571 kb on - strand, within GFF5353at 230.634 kb on - strand, within GFF5353at 230.634 kb on - strand, within GFF5353at 231.065 kb on + strand, within GFF5353at 231.066 kb on - strand, within GFF5353at 231.601 kb on + strand, within GFF5354at 231.601 kb on + strand, within GFF5354at 231.601 kb on + strand, within GFF5354at 231.601 kb on + strand, within GFF5354at 231.601 kb on + strand, within GFF5354at 231.601 kb on + strand, within GFF5354at 231.602 kb on - strand, within GFF5354at 231.602 kb on - strand, within GFF5354at 231.602 kb on - strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.637 kb on + strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.638 kb on - strand, within GFF5354at 231.668 kb on - strand, within GFF5354at 231.742 kb on + strand, within GFF5354at 231.743 kb on - strand, within GFF5354at 231.743 kb on - strand, within GFF5354at 231.743 kb on - strand, within GFF5354at 231.880 kb on + strand, within GFF5354at 231.880 kb on + strand, within GFF5354at 231.880 kb on + strand, within GFF5354at 231.880 kb on + strand, within GFF5354at 231.880 kb on + strand, within GFF5354at 231.881 kb on - strand, within GFF5354at 231.881 kb on - strand, within GFF5354at 231.881 kb on - strand, within GFF5354at 231.881 kb on - strand, within GFF5354at 231.881 kb on - strand, within GFF5354at 231.988 kb on + strand, within GFF5354at 231.989 kb on - strand, within GFF5354

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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229,468 - GFF5352 0.26 +0.1
229,489 + GFF5352 0.28 +0.1
229,489 + GFF5352 0.28 +0.2
229,489 + GFF5352 0.28 -0.3
229,489 + GFF5352 0.28 +0.5
229,490 - GFF5352 0.28 +0.3
229,490 - GFF5352 0.28 -0.1
229,490 - GFF5352 0.28 -0.1
229,490 - GFF5352 0.28 -1.3
229,566 + GFF5352 0.34 +0.2
229,566 + GFF5352 0.34 +0.3
229,567 - GFF5352 0.34 -0.1
229,768 + GFF5352 0.51 +0.3
229,768 + GFF5352 0.51 +0.2
229,768 + GFF5352 0.51 +0.0
229,768 + GFF5352 0.51 -0.4
229,768 + GFF5352 0.51 +3.3
229,768 + GFF5352 0.51 -0.3
229,768 + GFF5352 0.51 -1.5
229,768 + GFF5352 0.51 +1.6
229,768 + GFF5352 0.51 -0.6
229,768 + GFF5352 0.51 -0.6
229,769 - GFF5352 0.51 +1.1
229,769 - GFF5352 0.51 -0.4
230,047 + GFF5352 0.75 +0.2
230,047 + GFF5352 0.75 +0.2
230,047 + GFF5352 0.75 +0.7
230,047 + GFF5352 0.75 -0.2
230,048 - GFF5352 0.75 +0.4
230,048 - GFF5352 0.75 -0.3
230,360 + +0.7
230,360 + -0.4
230,360 + +0.4
230,361 - +0.4
230,361 - -0.2
230,361 - -0.3
230,465 + GFF5353 0.12 -0.7
230,465 + GFF5353 0.12 +1.1
230,465 + GFF5353 0.12 -0.5
230,465 + GFF5353 0.12 -1.3
230,465 + GFF5353 0.12 -0.6
230,466 - GFF5353 0.12 -0.6
230,466 - GFF5353 0.12 +0.5
230,466 - GFF5353 0.12 -0.7
230,549 + GFF5353 0.21 -0.8
230,549 + GFF5353 0.21 +0.4
230,550 - GFF5353 0.21 -1.6
230,550 - GFF5353 0.21 -0.2
230,550 - GFF5353 0.21 -0.5
230,550 - GFF5353 0.21 -0.4
230,550 - GFF5353 0.21 -1.6
230,570 + GFF5353 0.23 -0.2
230,570 + GFF5353 0.23 -0.1
230,570 + GFF5353 0.23 -0.3
230,570 + GFF5353 0.23 -0.1
230,570 + GFF5353 0.23 +0.3
230,570 + GFF5353 0.23 -0.9
230,571 - GFF5353 0.23 +0.0
230,571 - GFF5353 0.23 +0.4
230,571 - GFF5353 0.23 -0.5
230,571 - GFF5353 0.23 +0.4
230,634 - GFF5353 0.30 -1.4
230,634 - GFF5353 0.30 -0.1
231,065 + GFF5353 0.78 -0.3
231,066 - GFF5353 0.78 -0.4
231,601 + GFF5354 0.26 -0.4
231,601 + GFF5354 0.26 -0.2
231,601 + GFF5354 0.26 -0.9
231,601 + GFF5354 0.26 +0.1
231,601 + GFF5354 0.26 +0.3
231,601 + GFF5354 0.26 +0.7
231,602 - GFF5354 0.26 +0.1
231,602 - GFF5354 0.26 +0.4
231,602 - GFF5354 0.26 -0.6
231,637 + GFF5354 0.29 -2.0
231,637 + GFF5354 0.29 +0.1
231,637 + GFF5354 0.29 -2.1
231,637 + GFF5354 0.29 +0.7
231,637 + GFF5354 0.29 +1.1
231,637 + GFF5354 0.29 -0.3
231,637 + GFF5354 0.29 -0.0
231,637 + GFF5354 0.29 -0.7
231,637 + GFF5354 0.29 -0.7
231,637 + GFF5354 0.29 +0.1
231,637 + GFF5354 0.29 -0.3
231,637 + GFF5354 0.29 -0.1
231,637 + GFF5354 0.29 +1.3
231,637 + GFF5354 0.29 -1.1
231,637 + GFF5354 0.29 -1.3
231,638 - GFF5354 0.29 -1.1
231,638 - GFF5354 0.29 -0.9
231,638 - GFF5354 0.29 -0.8
231,638 - GFF5354 0.29 +0.3
231,638 - GFF5354 0.29 -2.5
231,638 - GFF5354 0.29 -0.5
231,638 - GFF5354 0.29 +0.7
231,638 - GFF5354 0.29 -0.7
231,638 - GFF5354 0.29 -0.2
231,638 - GFF5354 0.29 -0.4
231,638 - GFF5354 0.29 +0.7
231,638 - GFF5354 0.29 -0.5
231,638 - GFF5354 0.29 -1.0
231,638 - GFF5354 0.29 +0.5
231,638 - GFF5354 0.29 -0.6
231,638 - GFF5354 0.29 -0.7
231,668 - GFF5354 0.31 -0.3
231,742 + GFF5354 0.37 -0.7
231,743 - GFF5354 0.37 +0.3
231,743 - GFF5354 0.37 +0.1
231,743 - GFF5354 0.37 +0.1
231,880 + GFF5354 0.47 +1.2
231,880 + GFF5354 0.47 -1.6
231,880 + GFF5354 0.47 -0.4
231,880 + GFF5354 0.47 +0.1
231,880 + GFF5354 0.47 -1.3
231,881 - GFF5354 0.47 +0.0
231,881 - GFF5354 0.47 +0.2
231,881 - GFF5354 0.47 +0.9
231,881 - GFF5354 0.47 -2.0
231,881 - GFF5354 0.47 +2.0
231,988 + GFF5354 0.55 +1.3
231,989 - GFF5354 0.55 -0.9

Or see this region's nucleotide sequence