Strain Fitness in Variovorax sp. SCN45 around GFF526

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF525 and GFF526 are separated by 131 nucleotidesGFF526 and GFF527 overlap by 4 nucleotides GFF525 - Tripartite tricarboxylate transporter TctC family, at 567,387 to 568,346 GFF525 GFF526 - Tricarboxylate transport transcriptional regulator TctD, at 568,478 to 569,158 GFF526 GFF527 - Tricarboxylate transport sensor protein TctE, at 569,155 to 570,585 GFF527 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 567.590 kb on - strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.400 kb on + strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.401 kb on - strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.477 kb on + strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.478 kb on - strandat 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.770 kb on - strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.913 kb on + strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 568.914 kb on - strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.048 kb on + strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.049 kb on - strand, within GFF526at 569.135 kb on + strandat 569.135 kb on + strandat 569.136 kb on - strandat 569.136 kb on - strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.163 kb on + strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.164 kb on - strandat 569.246 kb on - strandat 569.278 kb on + strandat 569.278 kb on + strandat 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.338 kb on + strand, within GFF527at 569.339 kb on - strand, within GFF527at 569.374 kb on + strand, within GFF527at 569.374 kb on + strand, within GFF527at 569.375 kb on - strand, within GFF527at 569.375 kb on - strand, within GFF527at 569.422 kb on + strand, within GFF527at 569.423 kb on - strand, within GFF527at 569.423 kb on - strand, within GFF527at 569.531 kb on - strand, within GFF527at 569.531 kb on - strand, within GFF527

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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567,590 - GFF525 0.21 +0.2
567,712 + GFF525 0.34 -0.5
567,712 + GFF525 0.34 -0.2
567,713 - GFF525 0.34 +0.3
567,713 - GFF525 0.34 -0.6
567,713 - GFF525 0.34 -0.1
567,713 - GFF525 0.34 -0.0
567,713 - GFF525 0.34 +0.5
567,713 - GFF525 0.34 -0.1
567,713 - GFF525 0.34 -0.1
567,805 + GFF525 0.44 -0.5
567,805 + GFF525 0.44 +0.3
567,805 + GFF525 0.44 +0.4
567,805 + GFF525 0.44 +0.4
567,805 + GFF525 0.44 -0.6
567,805 + GFF525 0.44 -0.6
567,805 + GFF525 0.44 -1.6
567,805 + GFF525 0.44 -0.5
567,805 + GFF525 0.44 +0.4
567,805 + GFF525 0.44 -0.3
567,805 + GFF525 0.44 -0.1
567,805 + GFF525 0.44 +0.2
567,805 + GFF525 0.44 +0.6
567,805 + GFF525 0.44 +1.0
567,806 - GFF525 0.44 -0.0
567,806 - GFF525 0.44 +0.4
567,806 - GFF525 0.44 -0.5
567,806 - GFF525 0.44 +1.4
567,806 - GFF525 0.44 -0.3
567,806 - GFF525 0.44 -0.8
567,806 - GFF525 0.44 -0.4
567,806 - GFF525 0.44 +1.8
567,806 - GFF525 0.44 +0.2
567,806 - GFF525 0.44 -0.5
567,806 - GFF525 0.44 -0.7
567,806 - GFF525 0.44 -0.0
567,806 - GFF525 0.44 -0.5
567,982 + GFF525 0.62 +0.6
567,982 + GFF525 0.62 -0.3
567,982 + GFF525 0.62 +0.4
567,982 + GFF525 0.62 +1.0
567,982 + GFF525 0.62 -0.9
567,982 + GFF525 0.62 -0.4
567,982 + GFF525 0.62 +0.5
567,983 - GFF525 0.62 +0.6
567,983 - GFF525 0.62 +0.6
567,983 - GFF525 0.62 -2.7
568,159 + GFF525 0.80 -0.3
568,159 + GFF525 0.80 +0.8
568,160 - GFF525 0.81 +0.4
568,160 - GFF525 0.81 +1.6
568,400 + +0.5
568,400 + -0.1
568,400 + -0.4
568,400 + -0.7
568,400 + -1.1
568,401 - -0.3
568,401 - +0.2
568,401 - -0.0
568,401 - +0.8
568,477 + -0.8
568,477 + -0.4
568,477 + -0.8
568,477 + -0.4
568,477 + +0.3
568,478 - +1.6
568,478 - -0.2
568,478 - -0.5
568,770 - GFF526 0.43 -0.8
568,770 - GFF526 0.43 -0.3
568,770 - GFF526 0.43 +1.2
568,770 - GFF526 0.43 -1.6
568,770 - GFF526 0.43 -0.1
568,770 - GFF526 0.43 +0.1
568,913 + GFF526 0.64 -0.5
568,913 + GFF526 0.64 +1.0
568,913 + GFF526 0.64 +0.1
568,913 + GFF526 0.64 -0.6
568,913 + GFF526 0.64 -0.1
568,913 + GFF526 0.64 +1.7
568,913 + GFF526 0.64 +0.5
568,913 + GFF526 0.64 -0.6
568,913 + GFF526 0.64 -0.1
568,914 - GFF526 0.64 -0.1
568,914 - GFF526 0.64 +0.3
568,914 - GFF526 0.64 +0.6
568,914 - GFF526 0.64 +0.8
568,914 - GFF526 0.64 -0.5
568,914 - GFF526 0.64 +0.0
568,914 - GFF526 0.64 -0.6
569,048 + GFF526 0.84 +0.5
569,048 + GFF526 0.84 +1.2
569,048 + GFF526 0.84 +0.2
569,048 + GFF526 0.84 -0.7
569,049 - GFF526 0.84 -0.4
569,049 - GFF526 0.84 -0.8
569,135 + -0.1
569,135 + -0.9
569,136 - +0.4
569,136 - +0.4
569,163 + -2.2
569,163 + -0.1
569,163 + -0.9
569,163 + +0.5
569,163 + -0.9
569,163 + -1.1
569,163 + -1.0
569,163 + -0.1
569,163 + -0.8
569,163 + -0.0
569,163 + -0.0
569,163 + -0.2
569,163 + -0.4
569,164 - -0.5
569,164 - -0.1
569,164 - -1.0
569,164 - +0.6
569,164 - +0.1
569,164 - -2.2
569,164 - -1.9
569,164 - +0.7
569,164 - -0.3
569,164 - -1.3
569,164 - -0.3
569,164 - +0.7
569,164 - -0.6
569,164 - -0.6
569,164 - -0.8
569,246 - -1.2
569,278 + +0.5
569,278 + -0.6
569,338 + GFF527 0.13 -1.9
569,338 + GFF527 0.13 -0.4
569,338 + GFF527 0.13 +1.2
569,339 - GFF527 0.13 -1.0
569,374 + GFF527 0.15 -0.2
569,374 + GFF527 0.15 -0.1
569,375 - GFF527 0.15 -1.8
569,375 - GFF527 0.15 -0.5
569,422 + GFF527 0.19 -0.3
569,423 - GFF527 0.19 -0.2
569,423 - GFF527 0.19 -0.4
569,531 - GFF527 0.26 -0.3
569,531 - GFF527 0.26 +0.2

Or see this region's nucleotide sequence