Strain Fitness in Variovorax sp. SCN45 around GFF5241

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
105,618	+				-0.2
105,618	+				-1.3
105,619	-				-0.2
105,667	+		GFF5240	0.13	+0.9
105,668	-		GFF5240	0.13	+0.7
105,668	-		GFF5240	0.13	+0.5
105,668	-		GFF5240	0.13	-0.8
105,668	-		GFF5240	0.13	+1.3
105,895	+		GFF5240	0.37	+0.1
105,895	+		GFF5240	0.37	-0.1
105,895	+		GFF5240	0.37	-0.4
105,895	+		GFF5240	0.37	-0.4
105,895	+		GFF5240	0.37	-0.3
105,896	-		GFF5240	0.37	-1.3
105,896	-		GFF5240	0.37	+0.2
107,105	+		GFF5241	0.85	-0.9
107,105	+		GFF5241	0.85	-0.5
107,105	+		GFF5241	0.85	+0.2
107,106	-		GFF5241	0.86	-1.0
107,210	+				-0.4
107,210	+				+0.6
107,211	-				+0.6
107,211	-				+0.7
107,680	+		GFF5243	0.16	-0.5
107,680	+		GFF5243	0.16	-0.1
107,681	-		GFF5243	0.16	-0.1
108,182	+		GFF5244	0.21	-1.7
108,182	+		GFF5244	0.21	-0.4
108,182	+		GFF5244	0.21	+0.3
108,182	+		GFF5244	0.21	-0.6
108,182	+		GFF5244	0.21	+0.7
108,182	+		GFF5244	0.21	+0.1
108,182	+		GFF5244	0.21	+0.2
108,183	-		GFF5244	0.21	-0.2
108,183	-		GFF5244	0.21	+0.0
108,183	-		GFF5244	0.21	-1.3
108,183	-		GFF5244	0.21	+2.9
108,183	-		GFF5244	0.21	-0.2
108,183	-		GFF5244	0.21	-1.1
108,183	-		GFF5244	0.21	-0.6
108,188	+		GFF5244	0.22	+2.0
108,189	-		GFF5244	0.22	+0.7
108,189	-		GFF5244	0.22	-0.5