Strain Fitness in Variovorax sp. SCN45 around GFF5055

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5054 and GFF5055 overlap by 4 nucleotidesGFF5055 and GFF5056 are separated by 22 nucleotides GFF5054 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 154,809 to 156,119 GFF5054 GFF5055 - BUG/TctC family periplasmic protein, at 156,116 to 157,090 GFF5055 GFF5056 - Fumarylacetoacetase (EC 3.7.1.2), at 157,113 to 158,378 GFF5056 Position (kb) 156 157 158Strain fitness (log2 ratio) -2 -1 0 1 2at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.415 kb on + strand, within GFF5054at 155.415 kb on + strand, within GFF5054at 155.416 kb on - strand, within GFF5054at 155.430 kb on + strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.541 kb on + strand, within GFF5054at 155.542 kb on - strand, within GFF5054at 155.644 kb on - strand, within GFF5054at 155.841 kb on + strand, within GFF5054at 155.862 kb on + strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 156.075 kb on + strandat 156.075 kb on + strandat 156.076 kb on - strandat 156.198 kb on - strandat 156.198 kb on - strandat 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.581 kb on + strand, within GFF5055at 156.581 kb on + strand, within GFF5055at 156.582 kb on - strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.755 kb on - strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 157.040 kb on + strandat 157.040 kb on + strandat 157.040 kb on + strandat 157.041 kb on - strandat 157.041 kb on - strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.476 kb on + strand, within GFF5056at 157.476 kb on + strand, within GFF5056at 157.476 kb on + strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.477 kb on - strand, within GFF5056at 157.488 kb on + strand, within GFF5056at 157.488 kb on + strand, within GFF5056at 157.488 kb on + strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.489 kb on - strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.557 kb on + strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.558 kb on - strand, within GFF5056at 157.695 kb on + strand, within GFF5056at 157.695 kb on + strand, within GFF5056at 157.695 kb on + strand, within GFF5056at 157.695 kb on + strand, within GFF5056at 157.696 kb on - strand, within GFF5056at 157.696 kb on - strand, within GFF5056at 157.833 kb on + strand, within GFF5056at 157.833 kb on + strand, within GFF5056at 157.833 kb on + strand, within GFF5056at 157.834 kb on - strand, within GFF5056at 157.834 kb on - strand, within GFF5056at 157.834 kb on - strand, within GFF5056

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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155,223 + GFF5054 0.32 +0.5
155,223 + GFF5054 0.32 -0.2
155,223 + GFF5054 0.32 +0.3
155,223 + GFF5054 0.32 -0.2
155,223 + GFF5054 0.32 -1.2
155,223 + GFF5054 0.32 -0.3
155,224 - GFF5054 0.32 +1.3
155,224 - GFF5054 0.32 -0.4
155,224 - GFF5054 0.32 -0.1
155,224 - GFF5054 0.32 -0.6
155,224 - GFF5054 0.32 -0.2
155,224 - GFF5054 0.32 -0.0
155,224 - GFF5054 0.32 +0.7
155,415 + GFF5054 0.46 -0.1
155,415 + GFF5054 0.46 -0.2
155,416 - GFF5054 0.46 -0.7
155,430 + GFF5054 0.47 +0.4
155,431 - GFF5054 0.47 -1.0
155,431 - GFF5054 0.47 -1.4
155,431 - GFF5054 0.47 -0.5
155,431 - GFF5054 0.47 +0.1
155,541 + GFF5054 0.56 +0.2
155,542 - GFF5054 0.56 -0.2
155,644 - GFF5054 0.64 +0.4
155,841 + GFF5054 0.79 -0.0
155,862 + GFF5054 0.80 -0.4
155,863 - GFF5054 0.80 +0.1
155,863 - GFF5054 0.80 -1.5
155,863 - GFF5054 0.80 -0.3
155,863 - GFF5054 0.80 +1.0
156,075 + -2.2
156,075 + -0.4
156,076 - +0.3
156,198 - -0.9
156,198 - +0.8
156,230 + GFF5055 0.12 -0.2
156,230 + GFF5055 0.12 +0.2
156,230 + GFF5055 0.12 -0.3
156,230 + GFF5055 0.12 -0.3
156,230 + GFF5055 0.12 -0.4
156,230 + GFF5055 0.12 +0.0
156,231 - GFF5055 0.12 +0.0
156,231 - GFF5055 0.12 +0.5
156,231 - GFF5055 0.12 -2.0
156,231 - GFF5055 0.12 -0.5
156,380 + GFF5055 0.27 +0.7
156,380 + GFF5055 0.27 -0.8
156,380 + GFF5055 0.27 +0.0
156,381 - GFF5055 0.27 +0.6
156,381 - GFF5055 0.27 +1.3
156,381 - GFF5055 0.27 +0.6
156,381 - GFF5055 0.27 +0.8
156,381 - GFF5055 0.27 +0.3
156,381 - GFF5055 0.27 -0.4
156,431 + GFF5055 0.32 +1.4
156,431 + GFF5055 0.32 -1.1
156,431 + GFF5055 0.32 -1.6
156,431 + GFF5055 0.32 +1.6
156,431 + GFF5055 0.32 -1.9
156,431 + GFF5055 0.32 +0.3
156,431 + GFF5055 0.32 +1.3
156,431 + GFF5055 0.32 -0.7
156,432 - GFF5055 0.32 -0.7
156,432 - GFF5055 0.32 +0.8
156,432 - GFF5055 0.32 -1.2
156,432 - GFF5055 0.32 -0.1
156,432 - GFF5055 0.32 -0.1
156,432 - GFF5055 0.32 -1.6
156,432 - GFF5055 0.32 +0.3
156,432 - GFF5055 0.32 +0.1
156,581 + GFF5055 0.48 +0.1
156,581 + GFF5055 0.48 +0.8
156,582 - GFF5055 0.48 -0.4
156,668 + GFF5055 0.57 -0.4
156,668 + GFF5055 0.57 +0.1
156,668 + GFF5055 0.57 +0.9
156,668 + GFF5055 0.57 +0.4
156,668 + GFF5055 0.57 -0.5
156,668 + GFF5055 0.57 -2.2
156,668 + GFF5055 0.57 +1.8
156,668 + GFF5055 0.57 +0.5
156,669 - GFF5055 0.57 +0.8
156,669 - GFF5055 0.57 +0.7
156,669 - GFF5055 0.57 +1.4
156,669 - GFF5055 0.57 +0.7
156,669 - GFF5055 0.57 +1.7
156,755 - GFF5055 0.66 -0.4
156,881 + GFF5055 0.78 +0.1
156,881 + GFF5055 0.78 -0.2
156,881 + GFF5055 0.78 -2.3
156,882 - GFF5055 0.79 +0.1
156,882 - GFF5055 0.79 +0.4
156,882 - GFF5055 0.79 -0.4
156,882 - GFF5055 0.79 -0.4
157,040 + -0.0
157,040 + -0.6
157,040 + -1.2
157,041 - -0.5
157,041 - +0.1
157,108 + -0.3
157,108 + +1.8
157,108 + -0.7
157,108 + +0.0
157,108 + -0.5
157,108 + -0.8
157,108 + -0.3
157,109 - +0.0
157,109 - -1.2
157,109 - -0.3
157,476 + GFF5056 0.29 +0.5
157,476 + GFF5056 0.29 +0.5
157,476 + GFF5056 0.29 -1.8
157,477 - GFF5056 0.29 -0.7
157,477 - GFF5056 0.29 -2.0
157,477 - GFF5056 0.29 -0.9
157,477 - GFF5056 0.29 -0.2
157,477 - GFF5056 0.29 -1.5
157,477 - GFF5056 0.29 +0.0
157,488 + GFF5056 0.30 +0.5
157,488 + GFF5056 0.30 +0.1
157,488 + GFF5056 0.30 -0.7
157,489 - GFF5056 0.30 +0.3
157,489 - GFF5056 0.30 -1.0
157,489 - GFF5056 0.30 -0.4
157,489 - GFF5056 0.30 -1.7
157,489 - GFF5056 0.30 +0.8
157,489 - GFF5056 0.30 -1.3
157,489 - GFF5056 0.30 +1.1
157,557 + GFF5056 0.35 -0.7
157,557 + GFF5056 0.35 +0.7
157,557 + GFF5056 0.35 -0.5
157,557 + GFF5056 0.35 +0.5
157,557 + GFF5056 0.35 -1.0
157,557 + GFF5056 0.35 +0.5
157,557 + GFF5056 0.35 +0.6
157,558 - GFF5056 0.35 +1.3
157,558 - GFF5056 0.35 +0.5
157,558 - GFF5056 0.35 +1.4
157,558 - GFF5056 0.35 -1.5
157,558 - GFF5056 0.35 -0.9
157,558 - GFF5056 0.35 +0.8
157,558 - GFF5056 0.35 +0.3
157,558 - GFF5056 0.35 -0.9
157,558 - GFF5056 0.35 -0.0
157,558 - GFF5056 0.35 +1.0
157,558 - GFF5056 0.35 +0.4
157,558 - GFF5056 0.35 +0.5
157,558 - GFF5056 0.35 +0.2
157,558 - GFF5056 0.35 -0.1
157,558 - GFF5056 0.35 +0.2
157,558 - GFF5056 0.35 -0.3
157,558 - GFF5056 0.35 -0.2
157,558 - GFF5056 0.35 -0.6
157,695 + GFF5056 0.46 +0.3
157,695 + GFF5056 0.46 -1.9
157,695 + GFF5056 0.46 +0.3
157,695 + GFF5056 0.46 +1.1
157,696 - GFF5056 0.46 -2.4
157,696 - GFF5056 0.46 +1.1
157,833 + GFF5056 0.57 -1.3
157,833 + GFF5056 0.57 +0.2
157,833 + GFF5056 0.57 -1.0
157,834 - GFF5056 0.57 -0.1
157,834 - GFF5056 0.57 -1.2
157,834 - GFF5056 0.57 -1.4

Or see this region's nucleotide sequence