Strain Fitness in Variovorax sp. SCN45 around GFF5004

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
102,939	+		GFF5003	0.19	-0.4
102,939	+		GFF5003	0.19	-1.1
102,940	-		GFF5003	0.19	-0.8
102,940	-		GFF5003	0.19	-0.7
102,960	+		GFF5003	0.21	+0.2
102,960	+		GFF5003	0.21	-0.1
102,961	-		GFF5003	0.21	+0.1
102,961	-		GFF5003	0.21	+0.1
102,961	-		GFF5003	0.21	-1.5
102,984	+		GFF5003	0.23	-0.6
102,984	+		GFF5003	0.23	-0.3
102,984	+		GFF5003	0.23	-0.7
102,984	+		GFF5003	0.23	-0.7
102,984	+		GFF5003	0.23	-1.1
102,984	+		GFF5003	0.23	-2.2
102,984	+		GFF5003	0.23	-0.6
102,984	+		GFF5003	0.23	-0.6
102,984	+		GFF5003	0.23	+1.0
102,984	+		GFF5003	0.23	-0.6
102,984	+		GFF5003	0.23	+0.2
102,984	+		GFF5003	0.23	-0.6
102,985	-		GFF5003	0.23	+0.0
102,985	-		GFF5003	0.23	+0.3
102,985	-		GFF5003	0.23	-1.2
102,985	-		GFF5003	0.23	-0.1
102,985	-		GFF5003	0.23	-0.0
102,985	-		GFF5003	0.23	-0.7
102,985	-		GFF5003	0.23	-0.5
102,985	-		GFF5003	0.23	-1.6
102,985	-		GFF5003	0.23	-0.1
103,038	+		GFF5003	0.28	+1.1
103,038	+		GFF5003	0.28	+0.1
103,038	+		GFF5003	0.28	-0.2
103,039	-		GFF5003	0.28	-0.4
103,043	-		GFF5003	0.28	-0.5
103,092	+		GFF5003	0.33	-1.2
103,093	-		GFF5003	0.33	-0.8
103,093	-		GFF5003	0.33	-2.4
103,278	+		GFF5003	0.50	+0.8
103,278	+		GFF5003	0.50	-0.3
103,279	-		GFF5003	0.50	+0.5
103,279	-		GFF5003	0.50	-0.2
103,305	+		GFF5003	0.52	-0.0
103,305	+		GFF5003	0.52	-0.1
103,407	+		GFF5003	0.62	-0.7
103,408	-		GFF5003	0.62	+1.1
103,491	+		GFF5003	0.69	-1.1
103,492	-		GFF5003	0.69	+0.8
103,524	+		GFF5003	0.72	-0.2
103,524	+		GFF5003	0.72	+0.1
103,524	+		GFF5003	0.72	+1.6
103,524	+		GFF5003	0.72	-0.3
103,524	+		GFF5003	0.72	-0.1
103,524	+		GFF5003	0.72	+1.1
103,524	+		GFF5003	0.72	+1.3
103,524	+		GFF5003	0.72	-0.8
103,524	+		GFF5003	0.72	-1.1
103,524	+		GFF5003	0.72	-1.0
103,524	+		GFF5003	0.72	-0.4
103,524	+		GFF5003	0.72	+0.1
103,524	+		GFF5003	0.72	-0.9
103,524	+		GFF5003	0.72	-1.8
103,524	+		GFF5003	0.72	-0.0
103,524	+		GFF5003	0.72	-0.0
103,525	-		GFF5003	0.73	+0.4
103,525	-		GFF5003	0.73	+0.0
103,525	-		GFF5003	0.73	-0.0
103,525	-		GFF5003	0.73	-0.2
103,525	-		GFF5003	0.73	-0.4
103,525	-		GFF5003	0.73	-0.7
103,525	-		GFF5003	0.73	-0.9
103,525	-		GFF5003	0.73	+0.5
103,525	-		GFF5003	0.73	-0.1
103,525	-		GFF5003	0.73	+0.0
103,525	-		GFF5003	0.73	+1.2
103,791	+				-1.0
103,792	-				+1.3
103,792	-				-0.7
103,792	-				+0.1
103,924	+				-0.3
103,924	+				-0.3
103,924	+				-0.3
103,925	-				-0.5
103,925	-				-0.1
103,925	-				-0.4
103,925	-				+0.5
103,925	-				-0.0
103,925	-				-0.8
104,005	+		GFF5004	0.14	-0.2
104,005	+		GFF5004	0.14	-1.6
104,005	+		GFF5004	0.14	-0.3
104,006	-		GFF5004	0.14	-0.8
104,036	+		GFF5004	0.17	+0.6
104,152	+		GFF5004	0.27	-1.5
104,152	+		GFF5004	0.27	-0.6
104,153	-		GFF5004	0.27	+1.3
104,153	-		GFF5004	0.27	-0.9
104,153	-		GFF5004	0.27	+0.4
104,153	-		GFF5004	0.27	-0.5
104,155	+		GFF5004	0.27	-1.2
104,155	+		GFF5004	0.27	+0.0
104,155	+		GFF5004	0.27	+0.4
104,156	-		GFF5004	0.27	-0.8
104,156	-		GFF5004	0.27	+0.5
104,156	-		GFF5004	0.27	-2.2
104,653	+		GFF5004	0.68	-0.1
104,653	+		GFF5004	0.68	-0.5
104,653	+		GFF5004	0.68	-0.2
104,653	+		GFF5004	0.68	-0.2
104,653	+		GFF5004	0.68	+0.6
104,654	-		GFF5004	0.68	+0.3
104,654	-		GFF5004	0.68	-0.7
104,654	-		GFF5004	0.68	-0.6
104,654	-		GFF5004	0.68	+0.8
104,654	-		GFF5004	0.68	-0.1
104,654	-		GFF5004	0.68	-1.6
104,654	-		GFF5004	0.68	-0.3
104,654	-		GFF5004	0.68	+0.9
104,654	-		GFF5004	0.68	-0.6
104,654	-		GFF5004	0.68	+0.7
104,654	-		GFF5004	0.68	-0.6
104,654	-		GFF5004	0.68	-0.6
104,654	-		GFF5004	0.68	-0.8
105,043	-				-0.4
105,062	+				-0.3
105,062	+				+1.0
105,062	+				-0.9
105,062	+				+0.3
105,062	+				-0.4
105,062	+				-0.2
105,062	+				-0.3
105,062	+				-0.5
105,062	+				-0.8
105,062	+				-1.0
105,062	+				-0.7
105,063	-				+0.1
105,063	-				-0.4
105,063	-				+0.4
105,063	-				+0.7
105,063	-				-0.2
105,063	-				-0.6
105,063	-				-0.2
105,063	-				+0.1
105,063	-				+1.8
105,063	-				-0.5
105,064	+				-0.3
105,064	+				-0.5
105,064	+				+1.1
105,064	+				-1.0
105,064	+				-0.9
105,064	+				+0.1
105,064	+				+0.6
105,064	+				-2.0
105,064	+				+1.0
105,064	+				+0.4
105,064	+				+2.6
105,064	+				-0.7
105,065	-				+0.1
105,065	-				+0.3
105,065	-				-0.2
105,065	-				-0.5
105,065	-				+0.0
105,065	-				+0.3
105,065	-				-0.4
105,065	-				-0.9
105,065	-				+0.1
105,065	-				-0.2
105,065	-				-0.7
105,065	-				+0.0
105,065	-				+0.3
105,065	-				-0.1
105,065	-				+0.7
105,065	-				-0.8
105,065	-				-1.0
105,091	+				+0.1
105,091	+				-0.1
105,091	+				-0.4
105,091	+				-0.5
105,092	-				+0.1
105,092	-				+0.1
105,092	-				-0.4
105,095	+				+0.1
105,095	+				+0.2
105,095	+				-0.7
105,096	-				-1.8
105,096	-				+0.0
105,096	-				+1.6
105,096	-				-1.6
105,299	+		GFF5005	0.34	-0.6
105,299	+		GFF5005	0.34	-0.0
105,300	-		GFF5005	0.34	-0.9
105,326	+		GFF5005	0.39	+0.1
105,326	+		GFF5005	0.39	+0.2
105,326	+		GFF5005	0.39	+0.6
105,326	+		GFF5005	0.39	+0.8
105,326	+		GFF5005	0.39	+0.2
105,326	+		GFF5005	0.39	-1.3
105,326	+		GFF5005	0.39	+0.2
105,326	+		GFF5005	0.39	+0.2
105,326	+		GFF5005	0.39	-1.2
105,327	-		GFF5005	0.39	-0.4
105,327	-		GFF5005	0.39	+0.1
105,327	-		GFF5005	0.39	-0.0
105,327	-		GFF5005	0.39	-1.0
105,327	-		GFF5005	0.39	-0.5
105,327	-		GFF5005	0.39	-0.6
105,327	-		GFF5005	0.39	-1.9
105,327	-		GFF5005	0.39	-0.7
105,327	-		GFF5005	0.39	-0.1
105,327	-		GFF5005	0.39	-1.0
105,327	-		GFF5005	0.39	-0.4
105,327	-		GFF5005	0.39	+0.3
105,563	-		GFF5005	0.83	+0.0
105,563	-		GFF5005	0.83	-0.5
105,930	+		GFF5006	0.12	-0.2
105,930	+		GFF5006	0.12	-0.4
105,930	+		GFF5006	0.12	+0.4
105,930	+		GFF5006	0.12	+0.5
105,930	+		GFF5006	0.12	-1.4
105,930	+		GFF5006	0.12	-0.3
105,930	+		GFF5006	0.12	-0.7
105,930	+		GFF5006	0.12	+0.0
105,930	+		GFF5006	0.12	-0.4
105,930	+		GFF5006	0.12	-0.1
105,931	-		GFF5006	0.12	-0.7
105,931	-		GFF5006	0.12	-0.7
105,931	-		GFF5006	0.12	-0.0
105,931	-		GFF5006	0.12	+0.4
105,931	-		GFF5006	0.12	-0.5
105,931	-		GFF5006	0.12	-0.7
105,931	-		GFF5006	0.12	+0.5
105,931	-		GFF5006	0.12	-1.0
105,931	-		GFF5006	0.12	+0.0
105,931	-		GFF5006	0.12	+0.1
105,931	-		GFF5006	0.12	-0.0
105,931	-		GFF5006	0.12	+1.2
106,010	+		GFF5006	0.19	-0.2