Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4917 and GFF4918 overlap by 4 nucleotides GFF4918 and GFF4919 are separated by 216 nucleotides GFF4919 and GFF4920 are separated by 10 nucleotides GFF4920 and GFF4921 are separated by 52 nucleotides
GFF4917 - no description, at 10,116 to 11,918
GFF4917
GFF4918 - hypothetical protein, at 11,915 to 12,520
GFF4918
GFF4919 - hypothetical protein, at 12,737 to 13,396
GFF4919
GFF4920 - Isochorismatase family protein YecD, at 13,407 to 14,084
GFF4920
GFF4921 - hypothetical protein, at 14,137 to 14,517
GFF4921
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 12.065 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.144 kb on + strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.145 kb on - strand, within GFF4918 at 12.300 kb on + strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.301 kb on - strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.414 kb on + strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.415 kb on - strand, within GFF4918 at 12.453 kb on + strand, within GFF4918 at 12.453 kb on + strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.454 kb on - strand, within GFF4918 at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.511 kb on + strand at 12.512 kb on - strand at 12.512 kb on - strand at 12.512 kb on - strand at 12.525 kb on - strand at 12.525 kb on - strand at 12.587 kb on + strand at 12.587 kb on + strand at 12.620 kb on - strand at 12.720 kb on + strand at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.010 kb on + strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.011 kb on - strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.380 kb on + strand at 13.380 kb on + strand at 13.380 kb on + strand at 13.558 kb on + strand, within GFF4920 at 13.559 kb on - strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 14.021 kb on + strand at 14.032 kb on + strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.249 kb on + strand, within GFF4921 at 14.249 kb on + strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 12,065 + GFF4918 0.25 -0.7 12,144 + GFF4918 0.38 -0.3 12,144 + GFF4918 0.38 -0.1 12,144 + GFF4918 0.38 +0.5 12,144 + GFF4918 0.38 -0.0 12,144 + GFF4918 0.38 -1.3 12,144 + GFF4918 0.38 +0.4 12,145 - GFF4918 0.38 -0.3 12,145 - GFF4918 0.38 -0.1 12,145 - GFF4918 0.38 -0.2 12,300 + GFF4918 0.64 -0.2 12,301 - GFF4918 0.64 +0.1 12,301 - GFF4918 0.64 -0.3 12,301 - GFF4918 0.64 +0.3 12,301 - GFF4918 0.64 +1.0 12,301 - GFF4918 0.64 -1.8 12,414 + GFF4918 0.82 +0.1 12,414 + GFF4918 0.82 +0.1 12,414 + GFF4918 0.82 +0.4 12,415 - GFF4918 0.83 -0.1 12,415 - GFF4918 0.83 -0.7 12,415 - GFF4918 0.83 +0.0 12,415 - GFF4918 0.83 -0.5 12,415 - GFF4918 0.83 -1.0 12,453 + GFF4918 0.89 -0.3 12,453 + GFF4918 0.89 -1.3 12,454 - GFF4918 0.89 -0.2 12,454 - GFF4918 0.89 +1.4 12,454 - GFF4918 0.89 +0.2 12,511 + +0.2 12,511 + +1.3 12,511 + +1.2 12,511 + -0.9 12,511 + -0.6 12,512 - +0.1 12,512 - -1.0 12,512 - -1.0 12,525 - -1.0 12,525 - -0.7 12,587 + +0.1 12,587 + +1.1 12,620 - +0.4 12,720 + -0.2 13,010 + GFF4919 0.41 +0.5 13,010 + GFF4919 0.41 +0.6 13,010 + GFF4919 0.41 +1.2 13,010 + GFF4919 0.41 +0.3 13,011 - GFF4919 0.42 -0.4 13,011 - GFF4919 0.42 +0.8 13,011 - GFF4919 0.42 -0.5 13,011 - GFF4919 0.42 +0.8 13,011 - GFF4919 0.42 +0.1 13,271 + GFF4919 0.81 +0.2 13,271 + GFF4919 0.81 -0.2 13,271 + GFF4919 0.81 -0.1 13,271 + GFF4919 0.81 +0.9 13,271 + GFF4919 0.81 +0.4 13,271 + GFF4919 0.81 -0.4 13,271 + GFF4919 0.81 -1.3 13,271 + GFF4919 0.81 -0.0 13,271 + GFF4919 0.81 -0.5 13,271 + GFF4919 0.81 +1.4 13,271 + GFF4919 0.81 -1.7 13,271 + GFF4919 0.81 -1.2 13,271 + GFF4919 0.81 -0.5 13,271 + GFF4919 0.81 -0.7 13,271 + GFF4919 0.81 -0.8 13,271 + GFF4919 0.81 -0.2 13,272 - GFF4919 0.81 +0.6 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 -0.4 13,272 - GFF4919 0.81 +1.0 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 -0.4 13,272 - GFF4919 0.81 -0.6 13,272 - GFF4919 0.81 -0.5 13,272 - GFF4919 0.81 +0.5 13,272 - GFF4919 0.81 +0.6 13,272 - GFF4919 0.81 -1.6 13,272 - GFF4919 0.81 +0.3 13,272 - GFF4919 0.81 +0.3 13,272 - GFF4919 0.81 +1.4 13,272 - GFF4919 0.81 +0.4 13,380 + -0.9 13,380 + -1.2 13,380 + +0.1 13,558 + GFF4920 0.22 +0.8 13,559 - GFF4920 0.22 -0.0 13,675 + GFF4920 0.40 -0.6 13,675 + GFF4920 0.40 -1.1 13,675 + GFF4920 0.40 +0.4 13,675 + GFF4920 0.40 +0.8 13,676 - GFF4920 0.40 -0.0 13,676 - GFF4920 0.40 +0.1 13,676 - GFF4920 0.40 +0.1 13,676 - GFF4920 0.40 +1.3 13,676 - GFF4920 0.40 +0.6 13,676 - GFF4920 0.40 -0.3 13,676 - GFF4920 0.40 +1.0 13,676 - GFF4920 0.40 -0.1 13,676 - GFF4920 0.40 +0.2 14,021 + -0.3 14,032 + +0.4 14,139 - -0.2 14,139 - -0.2 14,139 - +0.6 14,139 - +0.4 14,249 + GFF4921 0.29 -0.5 14,249 + GFF4921 0.29 -0.1 14,250 - GFF4921 0.30 -1.7 14,250 - GFF4921 0.30 -1.9 14,250 - GFF4921 0.30 +0.3 14,354 + GFF4921 0.57 +1.6 14,354 + GFF4921 0.57 +0.3 14,354 + GFF4921 0.57 +0.3
Or see this region's nucleotide sequence