Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4691 and GFF4692 are separated by 211 nucleotides GFF4692 and GFF4693 are separated by 74 nucleotides GFF4693 and GFF4694 are separated by 69 nucleotides
GFF4691 - Cobalt/zinc/cadmium resistance protein CzcD, at 53,976 to 54,887
GFF4691
GFF4692 - Catalase-peroxidase KatG (EC 1.11.1.21), at 55,099 to 57,357
GFF4692
GFF4693 - hypothetical protein, at 57,432 to 58,223
GFF4693
GFF4694 - no description, at 58,293 to 58,664
GFF4694
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.197 kb on + strand, within GFF4691 at 54.197 kb on + strand, within GFF4691 at 54.208 kb on - strand, within GFF4691 at 54.211 kb on - strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.270 kb on + strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.271 kb on - strand, within GFF4691 at 54.279 kb on + strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.427 kb on - strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.745 kb on + strand, within GFF4691 at 54.746 kb on - strand, within GFF4691 at 54.746 kb on - strand, within GFF4691 at 54.943 kb on + strand at 54.943 kb on + strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.944 kb on - strand at 54.945 kb on + strand at 54.945 kb on + strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 54.946 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.029 kb on - strand at 55.249 kb on + strand at 55.351 kb on + strand, within GFF4692 at 55.351 kb on + strand, within GFF4692 at 55.352 kb on - strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.396 kb on + strand, within GFF4692 at 55.397 kb on - strand, within GFF4692 at 55.397 kb on - strand, within GFF4692 at 55.522 kb on + strand, within GFF4692 at 55.522 kb on + strand, within GFF4692 at 55.523 kb on - strand, within GFF4692 at 55.523 kb on - strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.651 kb on + strand, within GFF4692 at 55.652 kb on - strand, within GFF4692 at 55.652 kb on - strand, within GFF4692 at 55.693 kb on + strand, within GFF4692 at 55.816 kb on + strand, within GFF4692 at 55.817 kb on - strand, within GFF4692 at 55.817 kb on - strand, within GFF4692 at 55.817 kb on - strand, within GFF4692 at 56.146 kb on + strand, within GFF4692 at 56.146 kb on + strand, within GFF4692 at 56.303 kb on - strand, within GFF4692 at 56.410 kb on + strand, within GFF4692 at 56.411 kb on - strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.684 kb on + strand, within GFF4692 at 56.685 kb on - strand, within GFF4692 at 56.685 kb on - strand, within GFF4692 at 56.685 kb on - strand, within GFF4692 at 56.685 kb on - strand, within GFF4692 at 56.920 kb on + strand, within GFF4692 at 56.920 kb on + strand, within GFF4692 at 56.920 kb on + strand, within GFF4692 at 56.920 kb on + strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 56.921 kb on - strand, within GFF4692 at 57.163 kb on + strand at 57.163 kb on + strand at 57.164 kb on - strand at 57.164 kb on - strand at 57.164 kb on - strand at 57.164 kb on - strand at 57.164 kb on - strand at 57.265 kb on + strand at 57.265 kb on + strand at 57.265 kb on + strand at 57.265 kb on + strand at 57.265 kb on + strand at 57.265 kb on + strand at 57.266 kb on - strand at 57.266 kb on - strand at 57.387 kb on + strand at 57.387 kb on + strand at 57.387 kb on + strand at 57.387 kb on + strand at 57.387 kb on + strand at 57.388 kb on - strand at 57.388 kb on - strand at 57.407 kb on + strand at 57.408 kb on - strand at 57.435 kb on + strand at 57.435 kb on + strand at 57.435 kb on + strand at 57.435 kb on + strand at 57.435 kb on + strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.436 kb on - strand at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.879 kb on + strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 57.880 kb on - strand, within GFF4693 at 58.155 kb on + strand at 58.155 kb on + strand at 58.156 kb on - strand at 58.156 kb on - strand at 58.221 kb on + strand at 58.221 kb on + strand at 58.221 kb on + strand at 58.222 kb on - strand at 58.298 kb on + strand at 58.298 kb on + strand at 58.298 kb on + strand at 58.298 kb on + strand at 58.298 kb on + strand at 58.298 kb on + strand at 58.299 kb on - strand at 58.299 kb on - strand at 58.299 kb on - strand at 58.302 kb on + strand at 58.302 kb on + strand at 58.302 kb on + strand at 58.303 kb on - strand at 58.303 kb on - strand at 58.303 kb on - strand at 58.303 kb on - strand at 58.303 kb on - strand at 58.303 kb on - strand at 58.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 54,197 + GFF4691 0.24 +0.5 54,197 + GFF4691 0.24 -2.2 54,208 - GFF4691 0.25 -0.3 54,211 - GFF4691 0.26 -0.2 54,270 + GFF4691 0.32 -1.0 54,270 + GFF4691 0.32 -0.0 54,270 + GFF4691 0.32 -0.6 54,270 + GFF4691 0.32 -0.2 54,271 - GFF4691 0.32 +0.8 54,271 - GFF4691 0.32 -0.5 54,271 - GFF4691 0.32 -2.1 54,271 - GFF4691 0.32 -0.6 54,271 - GFF4691 0.32 +0.9 54,271 - GFF4691 0.32 -0.2 54,271 - GFF4691 0.32 +0.2 54,271 - GFF4691 0.32 +0.4 54,271 - GFF4691 0.32 -0.5 54,271 - GFF4691 0.32 -0.2 54,279 + GFF4691 0.33 -1.2 54,427 - GFF4691 0.49 -0.1 54,427 - GFF4691 0.49 -0.1 54,427 - GFF4691 0.49 -0.5 54,745 + GFF4691 0.84 -0.8 54,745 + GFF4691 0.84 +0.1 54,745 + GFF4691 0.84 +0.0 54,745 + GFF4691 0.84 -1.7 54,746 - GFF4691 0.84 -0.6 54,746 - GFF4691 0.84 -1.8 54,943 + +2.4 54,943 + -0.6 54,944 - +0.5 54,944 - +1.4 54,944 - -0.8 54,944 - -0.5 54,945 + -0.2 54,945 + +0.9 54,946 - -0.6 54,946 - -1.2 54,946 - -0.1 54,946 - -1.0 54,946 - -0.0 55,029 - +0.6 55,029 - -0.1 55,029 - +0.2 55,029 - +0.1 55,249 + +0.1 55,351 + GFF4692 0.11 -0.2 55,351 + GFF4692 0.11 +0.6 55,352 - GFF4692 0.11 +1.5 55,396 + GFF4692 0.13 -0.2 55,396 + GFF4692 0.13 -2.5 55,396 + GFF4692 0.13 -0.2 55,397 - GFF4692 0.13 -0.7 55,397 - GFF4692 0.13 +0.2 55,522 + GFF4692 0.19 +0.4 55,522 + GFF4692 0.19 +1.4 55,523 - GFF4692 0.19 -1.5 55,523 - GFF4692 0.19 +0.0 55,651 + GFF4692 0.24 +0.7 55,651 + GFF4692 0.24 +2.0 55,651 + GFF4692 0.24 -0.6 55,652 - GFF4692 0.24 -0.2 55,652 - GFF4692 0.24 +0.1 55,693 + GFF4692 0.26 +0.6 55,816 + GFF4692 0.32 -0.6 55,817 - GFF4692 0.32 +0.1 55,817 - GFF4692 0.32 +0.5 55,817 - GFF4692 0.32 +0.7 56,146 + GFF4692 0.46 -0.8 56,146 + GFF4692 0.46 -0.2 56,303 - GFF4692 0.53 -0.6 56,410 + GFF4692 0.58 -0.1 56,411 - GFF4692 0.58 +0.1 56,684 + GFF4692 0.70 +0.4 56,684 + GFF4692 0.70 -0.2 56,684 + GFF4692 0.70 -0.5 56,684 + GFF4692 0.70 +2.1 56,684 + GFF4692 0.70 -0.2 56,684 + GFF4692 0.70 -0.5 56,684 + GFF4692 0.70 +0.1 56,685 - GFF4692 0.70 -0.5 56,685 - GFF4692 0.70 +0.1 56,685 - GFF4692 0.70 -0.3 56,685 - GFF4692 0.70 +1.0 56,920 + GFF4692 0.81 -0.2 56,920 + GFF4692 0.81 -0.2 56,920 + GFF4692 0.81 +0.2 56,920 + GFF4692 0.81 +0.0 56,921 - GFF4692 0.81 -0.5 56,921 - GFF4692 0.81 -0.5 56,921 - GFF4692 0.81 +0.4 56,921 - GFF4692 0.81 -0.5 56,921 - GFF4692 0.81 -0.1 56,921 - GFF4692 0.81 -0.7 56,921 - GFF4692 0.81 -2.0 57,163 + -1.1 57,163 + +0.2 57,164 - -1.1 57,164 - +1.0 57,164 - -0.6 57,164 - -1.1 57,164 - -1.1 57,265 + -0.5 57,265 + +0.1 57,265 + -0.4 57,265 + +0.2 57,265 + +0.1 57,265 + +0.0 57,266 - -0.2 57,266 - +1.4 57,387 + +0.2 57,387 + -0.2 57,387 + -0.3 57,387 + +0.0 57,387 + -0.7 57,388 - +0.4 57,388 - +0.2 57,407 + -0.5 57,408 - +0.4 57,435 + -0.3 57,435 + +0.5 57,435 + +0.6 57,435 + -0.8 57,435 + -0.1 57,436 - -0.1 57,436 - -0.1 57,436 - -0.7 57,436 - +0.3 57,436 - -0.4 57,436 - -0.4 57,436 - +0.6 57,436 - -1.6 57,879 + GFF4693 0.56 -1.2 57,879 + GFF4693 0.56 +0.9 57,879 + GFF4693 0.56 -0.7 57,879 + GFF4693 0.56 +0.9 57,879 + GFF4693 0.56 -1.1 57,879 + GFF4693 0.56 +0.0 57,879 + GFF4693 0.56 +0.0 57,879 + GFF4693 0.56 +1.0 57,879 + GFF4693 0.56 -0.4 57,879 + GFF4693 0.56 -0.2 57,879 + GFF4693 0.56 +0.8 57,880 - GFF4693 0.57 +1.7 57,880 - GFF4693 0.57 -0.2 57,880 - GFF4693 0.57 -0.9 57,880 - GFF4693 0.57 -0.4 57,880 - GFF4693 0.57 +1.1 57,880 - GFF4693 0.57 -0.1 57,880 - GFF4693 0.57 -1.4 57,880 - GFF4693 0.57 -1.2 57,880 - GFF4693 0.57 +0.2 57,880 - GFF4693 0.57 +2.4 57,880 - GFF4693 0.57 +1.4 58,155 + -1.1 58,155 + -1.2 58,156 - -1.5 58,156 - -0.8 58,221 + -0.4 58,221 + -1.0 58,221 + -0.8 58,222 - -0.1 58,298 + -0.2 58,298 + -0.3 58,298 + -0.4 58,298 + -0.6 58,298 + -0.1 58,298 + -2.0 58,299 - +0.1 58,299 - -0.2 58,299 - -0.3 58,302 + -0.6 58,302 + +0.4 58,302 + -0.5 58,303 - +0.2 58,303 - +0.1 58,303 - +0.6 58,303 - -0.4 58,303 - -0.4 58,303 - +0.1 58,303 - -1.6
Or see this region's nucleotide sequence