Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4561 and GFF4562 are separated by 5 nucleotides GFF4562 and GFF4563 are separated by 129 nucleotides GFF4563 and GFF4564 are separated by 32 nucleotides
GFF4561 - Domain often clustered or fused with uracil-DNA glycosylase / Uracil-DNA glycosylase, putative family 6 (EC 3.2.2.27), at 196,344 to 197,867
GFF4561
GFF4562 - Biotin synthase related domain containing protein, at 197,873 to 199,126
GFF4562
GFF4563 - Ferredoxin, 2Fe-2S, at 199,256 to 199,615
GFF4563
GFF4564 - hypothetical protein, at 199,648 to 200,250
GFF4564
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.053 kb on - strand, within GFF4561 at 197.158 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.224 kb on + strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.225 kb on - strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.227 kb on + strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.228 kb on - strand, within GFF4561 at 197.557 kb on - strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.593 kb on + strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 197.594 kb on - strand, within GFF4561 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.219 kb on + strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.220 kb on - strand, within GFF4562 at 198.246 kb on + strand, within GFF4562 at 198.247 kb on - strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.327 kb on + strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.328 kb on - strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.330 kb on + strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.331 kb on - strand, within GFF4562 at 198.348 kb on + strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.349 kb on - strand, within GFF4562 at 198.357 kb on + strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.358 kb on - strand, within GFF4562 at 198.648 kb on + strand, within GFF4562 at 198.708 kb on + strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.709 kb on - strand, within GFF4562 at 198.831 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.912 kb on + strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.913 kb on - strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.924 kb on + strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.925 kb on - strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.984 kb on + strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 198.985 kb on - strand, within GFF4562 at 199.081 kb on - strand at 199.081 kb on - strand at 199.081 kb on - strand at 199.142 kb on + strand at 199.143 kb on - strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.147 kb on + strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.148 kb on - strand at 199.153 kb on + strand at 199.154 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.156 kb on - strand at 199.190 kb on + strand at 199.191 kb on - strand at 199.241 kb on + strand at 199.242 kb on - strand at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.394 kb on + strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.395 kb on - strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.400 kb on + strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.401 kb on - strand, within GFF4563 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.768 kb on + strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.769 kb on - strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.972 kb on + strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 199.973 kb on - strand, within GFF4564 at 200.074 kb on + strand, within GFF4564 at 200.075 kb on - strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.116 kb on + strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564 at 200.117 kb on - strand, within GFF4564
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 197,053 - GFF4561 0.47 -0.9 197,053 - GFF4561 0.47 -0.4 197,053 - GFF4561 0.47 -1.0 197,158 + GFF4561 0.53 -0.7 197,224 + GFF4561 0.58 +0.5 197,224 + GFF4561 0.58 +0.1 197,224 + GFF4561 0.58 -0.0 197,224 + GFF4561 0.58 -2.7 197,224 + GFF4561 0.58 -0.6 197,225 - GFF4561 0.58 -0.3 197,225 - GFF4561 0.58 -2.4 197,227 + GFF4561 0.58 -0.3 197,227 + GFF4561 0.58 -0.5 197,227 + GFF4561 0.58 -0.3 197,227 + GFF4561 0.58 -0.7 197,227 + GFF4561 0.58 -0.4 197,228 - GFF4561 0.58 -0.6 197,228 - GFF4561 0.58 +1.1 197,228 - GFF4561 0.58 -0.1 197,228 - GFF4561 0.58 +1.7 197,557 - GFF4561 0.80 +0.7 197,593 + GFF4561 0.82 -0.1 197,593 + GFF4561 0.82 +0.5 197,593 + GFF4561 0.82 +0.1 197,593 + GFF4561 0.82 -1.2 197,593 + GFF4561 0.82 -0.1 197,593 + GFF4561 0.82 +1.4 197,594 - GFF4561 0.82 +1.1 197,594 - GFF4561 0.82 -0.6 197,594 - GFF4561 0.82 -0.6 197,594 - GFF4561 0.82 +0.2 197,594 - GFF4561 0.82 -0.3 198,219 + GFF4562 0.28 +0.2 198,219 + GFF4562 0.28 -2.8 198,219 + GFF4562 0.28 +0.9 198,219 + GFF4562 0.28 +1.4 198,220 - GFF4562 0.28 -1.0 198,220 - GFF4562 0.28 +0.6 198,220 - GFF4562 0.28 +1.0 198,220 - GFF4562 0.28 +2.6 198,246 + GFF4562 0.30 -0.3 198,247 - GFF4562 0.30 +0.4 198,327 + GFF4562 0.36 -0.4 198,327 + GFF4562 0.36 -0.1 198,327 + GFF4562 0.36 +0.7 198,327 + GFF4562 0.36 +0.1 198,327 + GFF4562 0.36 +0.4 198,327 + GFF4562 0.36 +0.8 198,327 + GFF4562 0.36 -1.2 198,328 - GFF4562 0.36 +0.6 198,328 - GFF4562 0.36 -0.4 198,328 - GFF4562 0.36 -0.6 198,328 - GFF4562 0.36 -0.6 198,330 + GFF4562 0.36 -0.8 198,330 + GFF4562 0.36 -0.1 198,330 + GFF4562 0.36 -1.2 198,330 + GFF4562 0.36 +0.9 198,330 + GFF4562 0.36 +0.9 198,330 + GFF4562 0.36 +1.4 198,330 + GFF4562 0.36 +0.0 198,330 + GFF4562 0.36 -0.5 198,330 + GFF4562 0.36 +0.7 198,330 + GFF4562 0.36 +2.3 198,330 + GFF4562 0.36 -0.2 198,331 - GFF4562 0.37 +1.4 198,331 - GFF4562 0.37 -0.7 198,331 - GFF4562 0.37 -0.1 198,331 - GFF4562 0.37 +1.1 198,331 - GFF4562 0.37 +0.6 198,331 - GFF4562 0.37 +0.3 198,348 + GFF4562 0.38 -1.1 198,349 - GFF4562 0.38 +0.0 198,349 - GFF4562 0.38 +0.8 198,357 + GFF4562 0.39 -0.4 198,358 - GFF4562 0.39 -2.6 198,358 - GFF4562 0.39 +0.4 198,648 + GFF4562 0.62 -0.2 198,708 + GFF4562 0.67 -0.2 198,709 - GFF4562 0.67 -0.6 198,709 - GFF4562 0.67 +1.1 198,709 - GFF4562 0.67 -0.7 198,709 - GFF4562 0.67 -0.0 198,709 - GFF4562 0.67 +0.3 198,709 - GFF4562 0.67 +1.0 198,709 - GFF4562 0.67 -0.1 198,831 + GFF4562 0.76 -1.1 198,912 + GFF4562 0.83 -0.1 198,912 + GFF4562 0.83 -1.4 198,913 - GFF4562 0.83 +0.7 198,913 - GFF4562 0.83 -0.1 198,913 - GFF4562 0.83 +0.1 198,913 - GFF4562 0.83 +0.7 198,924 + GFF4562 0.84 +0.2 198,924 + GFF4562 0.84 -0.3 198,924 + GFF4562 0.84 -0.7 198,925 - GFF4562 0.84 +0.8 198,925 - GFF4562 0.84 -2.0 198,925 - GFF4562 0.84 +0.8 198,925 - GFF4562 0.84 -0.1 198,925 - GFF4562 0.84 +1.3 198,984 + GFF4562 0.89 -1.3 198,984 + GFF4562 0.89 +1.7 198,984 + GFF4562 0.89 +0.3 198,984 + GFF4562 0.89 +0.9 198,984 + GFF4562 0.89 -0.5 198,985 - GFF4562 0.89 -1.3 198,985 - GFF4562 0.89 +0.1 198,985 - GFF4562 0.89 -0.2 198,985 - GFF4562 0.89 +2.7 198,985 - GFF4562 0.89 -2.1 198,985 - GFF4562 0.89 +0.2 198,985 - GFF4562 0.89 -0.2 198,985 - GFF4562 0.89 +0.1 198,985 - GFF4562 0.89 +0.1 199,081 - -0.0 199,081 - +0.1 199,081 - -0.6 199,142 + +0.1 199,143 - -0.3 199,147 + +0.4 199,147 + -1.3 199,147 + -2.0 199,148 - -0.6 199,148 - +0.5 199,148 - -0.8 199,153 + +1.9 199,154 - -0.7 199,156 - +0.7 199,156 - +0.3 199,156 - -1.2 199,190 + +0.0 199,191 - -0.1 199,241 + +0.2 199,242 - -0.1 199,394 + GFF4563 0.38 -0.4 199,394 + GFF4563 0.38 -0.2 199,394 + GFF4563 0.38 +0.2 199,394 + GFF4563 0.38 -0.1 199,394 + GFF4563 0.38 -2.5 199,394 + GFF4563 0.38 +1.3 199,394 + GFF4563 0.38 -0.6 199,394 + GFF4563 0.38 -0.7 199,395 - GFF4563 0.39 +0.0 199,395 - GFF4563 0.39 +1.2 199,395 - GFF4563 0.39 -0.9 199,395 - GFF4563 0.39 +0.3 199,395 - GFF4563 0.39 -0.3 199,395 - GFF4563 0.39 -0.5 199,395 - GFF4563 0.39 -2.0 199,395 - GFF4563 0.39 -0.6 199,395 - GFF4563 0.39 +0.9 199,395 - GFF4563 0.39 -1.1 199,395 - GFF4563 0.39 -0.4 199,395 - GFF4563 0.39 +0.2 199,400 + GFF4563 0.40 +1.0 199,400 + GFF4563 0.40 +1.0 199,400 + GFF4563 0.40 -0.0 199,400 + GFF4563 0.40 -1.0 199,400 + GFF4563 0.40 -1.3 199,400 + GFF4563 0.40 -0.6 199,400 + GFF4563 0.40 -0.3 199,401 - GFF4563 0.40 +0.1 199,401 - GFF4563 0.40 +0.8 199,401 - GFF4563 0.40 +1.1 199,401 - GFF4563 0.40 -2.0 199,401 - GFF4563 0.40 +0.7 199,401 - GFF4563 0.40 +0.9 199,401 - GFF4563 0.40 +0.2 199,401 - GFF4563 0.40 +0.7 199,401 - GFF4563 0.40 +0.1 199,401 - GFF4563 0.40 -1.1 199,768 + GFF4564 0.20 -1.0 199,768 + GFF4564 0.20 +0.0 199,768 + GFF4564 0.20 -0.3 199,768 + GFF4564 0.20 -0.2 199,769 - GFF4564 0.20 +0.2 199,769 - GFF4564 0.20 -0.4 199,769 - GFF4564 0.20 -0.5 199,769 - GFF4564 0.20 +0.4 199,769 - GFF4564 0.20 -0.7 199,769 - GFF4564 0.20 +0.1 199,769 - GFF4564 0.20 -0.5 199,769 - GFF4564 0.20 +0.9 199,972 + GFF4564 0.54 +0.1 199,972 + GFF4564 0.54 +0.2 199,972 + GFF4564 0.54 -0.6 199,972 + GFF4564 0.54 +0.4 199,972 + GFF4564 0.54 +0.2 199,972 + GFF4564 0.54 -0.7 199,972 + GFF4564 0.54 -0.2 199,973 - GFF4564 0.54 +2.0 199,973 - GFF4564 0.54 +0.4 199,973 - GFF4564 0.54 +0.3 199,973 - GFF4564 0.54 -0.3 199,973 - GFF4564 0.54 -0.3 199,973 - GFF4564 0.54 -0.0 199,973 - GFF4564 0.54 +0.1 199,973 - GFF4564 0.54 -0.9 200,074 + GFF4564 0.71 +0.3 200,075 - GFF4564 0.71 +0.1 200,116 + GFF4564 0.78 -1.1 200,116 + GFF4564 0.78 +0.7 200,116 + GFF4564 0.78 +0.0 200,116 + GFF4564 0.78 +0.0 200,116 + GFF4564 0.78 -0.4 200,116 + GFF4564 0.78 -0.6 200,116 + GFF4564 0.78 -0.0 200,116 + GFF4564 0.78 -1.3 200,116 + GFF4564 0.78 -0.8 200,116 + GFF4564 0.78 +0.1 200,116 + GFF4564 0.78 -0.7 200,117 - GFF4564 0.78 -0.4 200,117 - GFF4564 0.78 +0.1 200,117 - GFF4564 0.78 +0.7 200,117 - GFF4564 0.78 +0.6 200,117 - GFF4564 0.78 -0.8 200,117 - GFF4564 0.78 +0.2 200,117 - GFF4564 0.78 -0.3 200,117 - GFF4564 0.78 +0.2 200,117 - GFF4564 0.78 +0.0 200,117 - GFF4564 0.78 -0.0 200,117 - GFF4564 0.78 -0.5 200,117 - GFF4564 0.78 -0.1 200,117 - GFF4564 0.78 +0.7 200,117 - GFF4564 0.78 -0.6
Or see this region's nucleotide sequence