Strain Fitness in Variovorax sp. SCN45 around GFF4499

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4498 and GFF4499 overlap by 4 nucleotidesGFF4499 and GFF4500 are separated by 17 nucleotidesGFF4500 and GFF4501 are separated by 172 nucleotides GFF4498 - Exoenzymes regulatory protein AepA precursor, at 141,917 to 143,911 GFF4498 GFF4499 - Uncharacterized DUF1427 protein PA2697, at 143,908 to 144,201 GFF4499 GFF4500 - FIG002283: Isochorismatase family protein, at 144,219 to 144,872 GFF4500 GFF4501 - Transcriptional regulator, LysR family, at 145,045 to 145,956 GFF4501 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.933 kb on - strand, within GFF4498at 142.933 kb on - strand, within GFF4498at 142.933 kb on - strand, within GFF4498at 142.950 kb on + strand, within GFF4498at 142.950 kb on + strand, within GFF4498at 142.950 kb on + strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 142.951 kb on - strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.019 kb on + strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.020 kb on - strand, within GFF4498at 143.073 kb on + strand, within GFF4498at 143.073 kb on + strand, within GFF4498at 143.074 kb on - strand, within GFF4498at 143.074 kb on - strand, within GFF4498at 143.175 kb on + strand, within GFF4498at 143.175 kb on + strand, within GFF4498at 143.215 kb on - strand, within GFF4498at 143.215 kb on - strand, within GFF4498at 143.316 kb on + strand, within GFF4498at 143.316 kb on + strand, within GFF4498at 143.317 kb on - strand, within GFF4498at 143.317 kb on - strand, within GFF4498at 143.361 kb on + strand, within GFF4498at 143.361 kb on + strand, within GFF4498at 143.361 kb on + strand, within GFF4498at 143.362 kb on - strand, within GFF4498at 143.362 kb on - strand, within GFF4498at 143.362 kb on - strand, within GFF4498at 143.362 kb on - strand, within GFF4498at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.149 kb on + strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.150 kb on - strand, within GFF4499at 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.191 kb on + strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.192 kb on - strandat 144.253 kb on + strandat 144.253 kb on + strandat 144.253 kb on + strandat 144.253 kb on + strandat 144.253 kb on + strandat 144.254 kb on - strandat 144.254 kb on - strandat 144.254 kb on - strandat 144.254 kb on - strandat 144.271 kb on + strandat 144.272 kb on - strandat 144.313 kb on + strand, within GFF4500at 144.313 kb on + strand, within GFF4500at 144.314 kb on - strand, within GFF4500at 144.314 kb on - strand, within GFF4500at 144.314 kb on - strand, within GFF4500at 144.314 kb on - strand, within GFF4500at 144.355 kb on + strand, within GFF4500at 144.355 kb on + strand, within GFF4500at 144.355 kb on + strand, within GFF4500at 144.355 kb on + strand, within GFF4500at 144.356 kb on - strand, within GFF4500at 144.356 kb on - strand, within GFF4500at 144.356 kb on - strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.457 kb on + strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.458 kb on - strand, within GFF4500at 144.984 kb on + strandat 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.153 kb on + strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501at 145.154 kb on - strand, within GFF4501

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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142,933 - GFF4498 0.51 +0.0
142,933 - GFF4498 0.51 +0.6
142,933 - GFF4498 0.51 +0.4
142,950 + GFF4498 0.52 +0.9
142,950 + GFF4498 0.52 -0.4
142,950 + GFF4498 0.52 -0.5
142,951 - GFF4498 0.52 +0.3
142,951 - GFF4498 0.52 -1.4
142,951 - GFF4498 0.52 +0.5
142,951 - GFF4498 0.52 -1.1
142,951 - GFF4498 0.52 +1.4
142,951 - GFF4498 0.52 -0.9
142,951 - GFF4498 0.52 -0.7
143,019 + GFF4498 0.55 +0.3
143,019 + GFF4498 0.55 -1.4
143,019 + GFF4498 0.55 -0.3
143,019 + GFF4498 0.55 -0.7
143,019 + GFF4498 0.55 +0.3
143,019 + GFF4498 0.55 +0.5
143,019 + GFF4498 0.55 -0.2
143,019 + GFF4498 0.55 -0.7
143,019 + GFF4498 0.55 -0.7
143,020 - GFF4498 0.55 -0.1
143,020 - GFF4498 0.55 -0.1
143,020 - GFF4498 0.55 -0.3
143,020 - GFF4498 0.55 -0.8
143,020 - GFF4498 0.55 -0.1
143,020 - GFF4498 0.55 +0.0
143,020 - GFF4498 0.55 +0.1
143,020 - GFF4498 0.55 +0.0
143,020 - GFF4498 0.55 +0.3
143,073 + GFF4498 0.58 -0.2
143,073 + GFF4498 0.58 +0.1
143,074 - GFF4498 0.58 -0.3
143,074 - GFF4498 0.58 -0.7
143,175 + GFF4498 0.63 -0.8
143,175 + GFF4498 0.63 -1.0
143,215 - GFF4498 0.65 +0.2
143,215 - GFF4498 0.65 +0.6
143,316 + GFF4498 0.70 +1.0
143,316 + GFF4498 0.70 -0.1
143,317 - GFF4498 0.70 -0.4
143,317 - GFF4498 0.70 +0.4
143,361 + GFF4498 0.72 +0.2
143,361 + GFF4498 0.72 +1.5
143,361 + GFF4498 0.72 +0.3
143,362 - GFF4498 0.72 -0.7
143,362 - GFF4498 0.72 -0.8
143,362 - GFF4498 0.72 -0.4
143,362 - GFF4498 0.72 -0.1
144,149 + GFF4499 0.82 -0.7
144,149 + GFF4499 0.82 -0.4
144,149 + GFF4499 0.82 -2.9
144,149 + GFF4499 0.82 -0.8
144,149 + GFF4499 0.82 +0.1
144,149 + GFF4499 0.82 -1.9
144,149 + GFF4499 0.82 -0.1
144,150 - GFF4499 0.82 -1.6
144,150 - GFF4499 0.82 +0.1
144,150 - GFF4499 0.82 +0.4
144,150 - GFF4499 0.82 +0.3
144,150 - GFF4499 0.82 -1.3
144,150 - GFF4499 0.82 +0.0
144,191 + -1.1
144,191 + -0.2
144,191 + -0.3
144,191 + -0.1
144,191 + -1.1
144,191 + -0.7
144,191 + +0.1
144,191 + +2.3
144,191 + -0.5
144,192 - -0.0
144,192 - -1.4
144,192 - +0.4
144,192 - -0.3
144,192 - -0.4
144,192 - -1.3
144,192 - -0.0
144,192 - -1.0
144,192 - -0.2
144,192 - -1.2
144,253 + +1.7
144,253 + -1.2
144,253 + +1.1
144,253 + -1.7
144,253 + -0.1
144,254 - +1.7
144,254 - -0.0
144,254 - +0.2
144,254 - -0.4
144,271 + +1.3
144,272 - -0.3
144,313 + GFF4500 0.14 -0.1
144,313 + GFF4500 0.14 +0.3
144,314 - GFF4500 0.15 -0.1
144,314 - GFF4500 0.15 +0.3
144,314 - GFF4500 0.15 -0.1
144,314 - GFF4500 0.15 -1.3
144,355 + GFF4500 0.21 -0.4
144,355 + GFF4500 0.21 +0.1
144,355 + GFF4500 0.21 +0.6
144,355 + GFF4500 0.21 -0.4
144,356 - GFF4500 0.21 -1.9
144,356 - GFF4500 0.21 -0.2
144,356 - GFF4500 0.21 -0.2
144,457 + GFF4500 0.36 +0.2
144,457 + GFF4500 0.36 +1.1
144,457 + GFF4500 0.36 -0.0
144,457 + GFF4500 0.36 +0.4
144,457 + GFF4500 0.36 -0.4
144,457 + GFF4500 0.36 -0.7
144,458 - GFF4500 0.37 -1.4
144,458 - GFF4500 0.37 +0.1
144,458 - GFF4500 0.37 -0.6
144,458 - GFF4500 0.37 -0.3
144,458 - GFF4500 0.37 -1.6
144,458 - GFF4500 0.37 -0.9
144,458 - GFF4500 0.37 -0.6
144,458 - GFF4500 0.37 -0.3
144,458 - GFF4500 0.37 -0.0
144,458 - GFF4500 0.37 -0.8
144,458 - GFF4500 0.37 +0.6
144,458 - GFF4500 0.37 +1.0
144,458 - GFF4500 0.37 -0.7
144,458 - GFF4500 0.37 -0.2
144,458 - GFF4500 0.37 +0.5
144,984 + -2.5
145,153 + GFF4501 0.12 +0.5
145,153 + GFF4501 0.12 -0.1
145,153 + GFF4501 0.12 -0.4
145,153 + GFF4501 0.12 -0.9
145,153 + GFF4501 0.12 -2.2
145,153 + GFF4501 0.12 -0.1
145,154 - GFF4501 0.12 -0.4
145,154 - GFF4501 0.12 -1.0
145,154 - GFF4501 0.12 -1.3
145,154 - GFF4501 0.12 -0.2
145,154 - GFF4501 0.12 +0.6
145,154 - GFF4501 0.12 +0.1

Or see this region's nucleotide sequence