Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4389 and GFF4390 are separated by 457 nucleotides GFF4390 and GFF4391 overlap by 4 nucleotides
GFF4389 - Type IV secretory pathway, VirD2 components (relaxase), at 17,132 to 19,126
GFF4389
GFF4390 - Membrane-fusion protein, at 19,584 to 20,471
GFF4390
GFF4391 - Acriflavin resistance protein, at 20,468 to 23,791
GFF4391
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.593 kb on + strand, within GFF4389 at 18.594 kb on - strand, within GFF4389 at 18.594 kb on - strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.819 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.882 kb on + strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.883 kb on - strand, within GFF4389 at 18.944 kb on + strand at 18.944 kb on + strand at 18.944 kb on + strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.945 kb on - strand at 18.977 kb on + strand at 18.978 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.158 kb on + strand at 19.158 kb on + strand at 19.159 kb on - strand at 19.235 kb on + strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.236 kb on - strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.329 kb on + strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.330 kb on - strand at 19.427 kb on + strand at 19.427 kb on + strand at 19.427 kb on + strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.428 kb on - strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.435 kb on + strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.436 kb on - strand at 19.516 kb on + strand at 19.516 kb on + strand at 19.517 kb on - strand at 19.538 kb on + strand at 19.538 kb on + strand at 19.539 kb on - strand at 19.539 kb on - strand at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.899 kb on + strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 19.900 kb on - strand, within GFF4390 at 20.160 kb on + strand, within GFF4390 at 20.160 kb on + strand, within GFF4390 at 20.230 kb on + strand, within GFF4390 at 20.230 kb on + strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.231 kb on - strand, within GFF4390 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.816 kb on + strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.817 kb on - strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.933 kb on + strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.934 kb on - strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.942 kb on + strand, within GFF4391 at 20.943 kb on - strand, within GFF4391 at 20.943 kb on - strand, within GFF4391 at 20.994 kb on - strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.074 kb on + strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.075 kb on - strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.147 kb on + strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.148 kb on - strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.162 kb on + strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.163 kb on - strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.188 kb on + strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.189 kb on - strand, within GFF4391 at 21.248 kb on + strand, within GFF4391 at 21.249 kb on - strand, within GFF4391 at 21.249 kb on - strand, within GFF4391
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 18,593 + GFF4389 0.73 -0.6 18,593 + GFF4389 0.73 +0.5 18,593 + GFF4389 0.73 -0.5 18,593 + GFF4389 0.73 -0.2 18,593 + GFF4389 0.73 -0.4 18,593 + GFF4389 0.73 -0.9 18,593 + GFF4389 0.73 -1.1 18,594 - GFF4389 0.73 -2.4 18,594 - GFF4389 0.73 +1.3 18,819 + GFF4389 0.85 +1.7 18,819 + GFF4389 0.85 +1.7 18,819 + GFF4389 0.85 +0.0 18,819 + GFF4389 0.85 +1.3 18,819 + GFF4389 0.85 +0.6 18,819 + GFF4389 0.85 -0.3 18,819 + GFF4389 0.85 -1.6 18,882 + GFF4389 0.88 -0.4 18,882 + GFF4389 0.88 -0.0 18,882 + GFF4389 0.88 +0.0 18,882 + GFF4389 0.88 +0.8 18,882 + GFF4389 0.88 -0.6 18,882 + GFF4389 0.88 +0.3 18,882 + GFF4389 0.88 -0.1 18,882 + GFF4389 0.88 -0.1 18,883 - GFF4389 0.88 -0.8 18,883 - GFF4389 0.88 -1.4 18,883 - GFF4389 0.88 -0.3 18,883 - GFF4389 0.88 -0.2 18,883 - GFF4389 0.88 +0.4 18,944 + +0.1 18,944 + +0.1 18,944 + -0.4 18,945 - +0.5 18,945 - +0.0 18,945 - -0.8 18,945 - +1.4 18,945 - +0.4 18,945 - +0.2 18,977 + -0.1 18,978 - -0.6 19,103 - +0.0 19,103 - +1.0 19,103 - +0.4 19,103 - -1.3 19,158 + -0.3 19,158 + -1.7 19,159 - -0.3 19,235 + -0.9 19,236 - -2.1 19,236 - +0.2 19,236 - -0.4 19,236 - -0.5 19,325 + +0.1 19,325 + +0.1 19,325 + -0.3 19,325 + +0.9 19,325 + -0.5 19,325 + -0.5 19,325 + +0.3 19,325 + -0.2 19,325 + -0.6 19,325 + +0.3 19,325 + -0.7 19,325 + +0.3 19,325 + -0.7 19,325 + +0.1 19,325 + -0.7 19,325 + -0.8 19,325 + -0.3 19,325 + -0.7 19,325 + -0.5 19,325 + -1.4 19,325 + +0.5 19,326 - -0.1 19,326 - -0.4 19,326 - -1.2 19,326 - +0.1 19,326 - +0.1 19,326 - -1.4 19,326 - -0.3 19,326 - -1.0 19,326 - -0.5 19,326 - -0.3 19,326 - +1.5 19,326 - +0.0 19,326 - +0.0 19,326 - -0.6 19,326 - -1.6 19,326 - +0.2 19,326 - +0.1 19,326 - -0.6 19,329 + -0.5 19,329 + -0.0 19,329 + -2.1 19,329 + -0.4 19,329 + -0.9 19,329 + +0.1 19,329 + -0.5 19,329 + -0.2 19,329 + -0.0 19,329 + +0.8 19,329 + +0.3 19,329 + -2.2 19,330 - +0.1 19,330 - -0.6 19,330 - +0.1 19,330 - -0.1 19,330 - +0.1 19,330 - -0.4 19,330 - +1.4 19,330 - -0.4 19,330 - -0.8 19,330 - -0.2 19,330 - -0.6 19,330 - +2.5 19,330 - -0.9 19,330 - -0.6 19,330 - -0.2 19,427 + +0.5 19,427 + -0.4 19,427 + +0.4 19,428 - +0.1 19,428 - -0.1 19,428 - +0.6 19,428 - -0.4 19,428 - -0.4 19,428 - -1.7 19,435 + -1.9 19,435 + +0.7 19,435 + -0.3 19,435 + +1.2 19,435 + -0.6 19,436 - -2.0 19,436 - -0.6 19,436 - +1.0 19,436 - -1.4 19,436 - +0.9 19,436 - -0.3 19,436 - -0.2 19,436 - +0.3 19,436 - -0.7 19,436 - -0.3 19,436 - +0.1 19,436 - -0.9 19,436 - +0.0 19,436 - -0.9 19,436 - +0.3 19,436 - -0.2 19,516 + +0.1 19,516 + +0.4 19,517 - -0.9 19,538 + +2.2 19,538 + +2.3 19,539 - +1.0 19,539 - +0.5 19,899 + GFF4390 0.35 -0.2 19,899 + GFF4390 0.35 -0.1 19,899 + GFF4390 0.35 -0.1 19,899 + GFF4390 0.35 -0.0 19,899 + GFF4390 0.35 -2.2 19,899 + GFF4390 0.35 +2.0 19,899 + GFF4390 0.35 -0.3 19,899 + GFF4390 0.35 -0.6 19,899 + GFF4390 0.35 -0.6 19,899 + GFF4390 0.35 +0.1 19,899 + GFF4390 0.35 +0.8 19,899 + GFF4390 0.35 -0.6 19,899 + GFF4390 0.35 +0.1 19,899 + GFF4390 0.35 +0.3 19,899 + GFF4390 0.35 -1.2 19,899 + GFF4390 0.35 -1.0 19,899 + GFF4390 0.35 +0.1 19,900 - GFF4390 0.36 +1.4 19,900 - GFF4390 0.36 +0.1 19,900 - GFF4390 0.36 +0.2 19,900 - GFF4390 0.36 +0.3 19,900 - GFF4390 0.36 -1.1 19,900 - GFF4390 0.36 -0.0 19,900 - GFF4390 0.36 -0.7 19,900 - GFF4390 0.36 -1.3 19,900 - GFF4390 0.36 -1.7 19,900 - GFF4390 0.36 -0.9 19,900 - GFF4390 0.36 +0.3 19,900 - GFF4390 0.36 +1.7 19,900 - GFF4390 0.36 -0.1 19,900 - GFF4390 0.36 +0.5 19,900 - GFF4390 0.36 -0.3 19,900 - GFF4390 0.36 -0.4 19,900 - GFF4390 0.36 -0.6 19,900 - GFF4390 0.36 +0.7 20,160 + GFF4390 0.65 -0.1 20,160 + GFF4390 0.65 +0.6 20,230 + GFF4390 0.73 -1.8 20,230 + GFF4390 0.73 -0.3 20,231 - GFF4390 0.73 -0.3 20,231 - GFF4390 0.73 +0.4 20,231 - GFF4390 0.73 +0.0 20,816 + GFF4391 0.10 -0.1 20,816 + GFF4391 0.10 -0.7 20,816 + GFF4391 0.10 -0.1 20,816 + GFF4391 0.10 -0.5 20,816 + GFF4391 0.10 -1.2 20,817 - GFF4391 0.10 -2.7 20,817 - GFF4391 0.10 -0.8 20,817 - GFF4391 0.10 -0.1 20,933 + GFF4391 0.14 -0.5 20,933 + GFF4391 0.14 -0.0 20,933 + GFF4391 0.14 +0.7 20,933 + GFF4391 0.14 +2.0 20,933 + GFF4391 0.14 -0.5 20,934 - GFF4391 0.14 +0.3 20,934 - GFF4391 0.14 -0.1 20,934 - GFF4391 0.14 -0.3 20,934 - GFF4391 0.14 +0.3 20,942 + GFF4391 0.14 +0.5 20,942 + GFF4391 0.14 -0.8 20,942 + GFF4391 0.14 +0.4 20,942 + GFF4391 0.14 +0.2 20,942 + GFF4391 0.14 +1.3 20,942 + GFF4391 0.14 -0.3 20,942 + GFF4391 0.14 +0.5 20,942 + GFF4391 0.14 +0.6 20,942 + GFF4391 0.14 +0.9 20,942 + GFF4391 0.14 +0.3 20,943 - GFF4391 0.14 -1.5 20,943 - GFF4391 0.14 +0.5 20,994 - GFF4391 0.16 -0.9 21,074 + GFF4391 0.18 +0.2 21,074 + GFF4391 0.18 -0.4 21,074 + GFF4391 0.18 -0.5 21,075 - GFF4391 0.18 -0.3 21,075 - GFF4391 0.18 -0.4 21,075 - GFF4391 0.18 -1.4 21,075 - GFF4391 0.18 +0.3 21,147 + GFF4391 0.20 +0.5 21,147 + GFF4391 0.20 +0.5 21,147 + GFF4391 0.20 +0.6 21,147 + GFF4391 0.20 -0.4 21,147 + GFF4391 0.20 -0.5 21,147 + GFF4391 0.20 -1.2 21,147 + GFF4391 0.20 +1.1 21,147 + GFF4391 0.20 -0.3 21,147 + GFF4391 0.20 +0.1 21,147 + GFF4391 0.20 -0.1 21,147 + GFF4391 0.20 -0.1 21,147 + GFF4391 0.20 -0.6 21,148 - GFF4391 0.20 -0.8 21,148 - GFF4391 0.20 -0.4 21,148 - GFF4391 0.20 -0.6 21,148 - GFF4391 0.20 -0.9 21,148 - GFF4391 0.20 -0.2 21,148 - GFF4391 0.20 +1.3 21,162 + GFF4391 0.21 -1.1 21,162 + GFF4391 0.21 -0.9 21,162 + GFF4391 0.21 -0.0 21,162 + GFF4391 0.21 +0.1 21,162 + GFF4391 0.21 +0.1 21,162 + GFF4391 0.21 -0.4 21,162 + GFF4391 0.21 -1.4 21,162 + GFF4391 0.21 +0.7 21,162 + GFF4391 0.21 -0.1 21,162 + GFF4391 0.21 -0.2 21,162 + GFF4391 0.21 +0.3 21,163 - GFF4391 0.21 +0.5 21,163 - GFF4391 0.21 +0.4 21,163 - GFF4391 0.21 -1.4 21,163 - GFF4391 0.21 -0.1 21,163 - GFF4391 0.21 -1.1 21,163 - GFF4391 0.21 -0.1 21,163 - GFF4391 0.21 -0.5 21,163 - GFF4391 0.21 -0.2 21,163 - GFF4391 0.21 -0.2 21,163 - GFF4391 0.21 +0.2 21,188 + GFF4391 0.22 +0.6 21,188 + GFF4391 0.22 +0.3 21,188 + GFF4391 0.22 +0.7 21,189 - GFF4391 0.22 +0.1 21,189 - GFF4391 0.22 -0.3 21,189 - GFF4391 0.22 -0.9 21,189 - GFF4391 0.22 +0.1 21,189 - GFF4391 0.22 -0.1 21,189 - GFF4391 0.22 +0.7 21,248 + GFF4391 0.23 -0.8 21,249 - GFF4391 0.23 -0.3 21,249 - GFF4391 0.23 -0.3
Or see this region's nucleotide sequence