Strain Fitness in Variovorax sp. SCN45 around GFF4181

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
85,902	+		GFF4180	0.86	-0.8
85,902	+		GFF4180	0.86	-0.5
85,903	-		GFF4180	0.86	+1.0
85,903	-		GFF4180	0.86	-0.2
85,903	-		GFF4180	0.86	-0.1
85,989	-		GFF4180	0.90	-0.4
86,114	+				-1.0
86,114	+				-0.5
86,114	+				+1.1
86,114	+				-0.8
86,114	+				+0.1
86,114	+				+0.4
86,115	-				-0.6
86,115	-				-0.2
86,115	-				-1.2
86,215	+				-0.3
86,215	+				-0.5
86,254	+				-0.9
86,254	+				-0.1
86,254	+				-2.0
86,254	+				-1.7
86,254	+				-0.2
86,254	+				-0.7
86,254	+				+0.4
86,254	+				-0.7
86,255	-				-0.5
86,255	-				-0.2
86,258	+				-1.2
86,258	+				-0.0
86,354	-				-0.8
86,378	-				+0.5
86,378	-				-0.5
86,378	-				+1.5
86,378	-				-0.1
86,378	-				-1.3
86,391	+				-0.4
86,391	+				-1.3
86,392	-				+0.3
86,392	-				-0.0
86,392	-				-1.0
86,395	+				-0.2
87,024	+		GFF4181	0.59	-0.4
87,024	+		GFF4181	0.59	+0.1
87,024	+		GFF4181	0.59	-0.7
87,025	-		GFF4181	0.59	-1.0
87,308	+				-0.3
87,308	+				+0.8
87,309	-				-0.3
87,437	+		GFF4182	0.34	+0.0
87,438	-		GFF4182	0.34	-0.2
87,717	-		GFF4182	0.89	+0.7
88,053	+		GFF4183	0.16	-0.4
88,053	+		GFF4183	0.16	-0.3
88,054	-		GFF4183	0.16	+0.2
88,054	-		GFF4183	0.16	+0.7
88,054	-		GFF4183	0.16	+0.3