Strain Fitness in Variovorax sp. SCN45 around GFF3801

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3800 and GFF3801 are separated by 18 nucleotidesGFF3801 and GFF3802 are separated by 89 nucleotides GFF3800 - Fumarylacetoacetate hydrolase family protein, at 300,291 to 301,388 GFF3800 GFF3801 - Response regulator receiver protein, at 301,407 to 302,186 GFF3801 GFF3802 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 302,276 to 304,045 GFF3802 Position (kb) 301 302 303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 300.447 kb on + strand, within GFF3800at 300.447 kb on + strand, within GFF3800at 300.448 kb on - strand, within GFF3800at 300.448 kb on - strand, within GFF3800at 300.448 kb on - strand, within GFF3800at 300.528 kb on + strand, within GFF3800at 300.528 kb on + strand, within GFF3800at 300.529 kb on - strand, within GFF3800at 300.552 kb on + strand, within GFF3800at 300.552 kb on + strand, within GFF3800at 300.553 kb on - strand, within GFF3800at 300.612 kb on + strand, within GFF3800at 300.612 kb on + strand, within GFF3800at 300.612 kb on + strand, within GFF3800at 300.613 kb on - strand, within GFF3800at 300.613 kb on - strand, within GFF3800at 300.613 kb on - strand, within GFF3800at 300.613 kb on - strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.630 kb on + strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 300.631 kb on - strand, within GFF3800at 301.138 kb on - strand, within GFF3800at 301.138 kb on - strand, within GFF3800at 301.138 kb on - strand, within GFF3800at 301.191 kb on + strand, within GFF3800at 301.191 kb on + strand, within GFF3800at 301.191 kb on + strand, within GFF3800at 301.192 kb on - strand, within GFF3800at 301.192 kb on - strand, within GFF3800at 301.192 kb on - strand, within GFF3800at 301.192 kb on - strand, within GFF3800at 301.449 kb on + strandat 301.450 kb on - strandat 301.450 kb on - strandat 301.475 kb on - strandat 301.738 kb on + strand, within GFF3801at 301.739 kb on - strand, within GFF3801at 301.739 kb on - strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.816 kb on + strand, within GFF3801at 301.832 kb on - strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.954 kb on + strand, within GFF3801at 301.955 kb on - strand, within GFF3801at 301.988 kb on - strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.086 kb on + strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.087 kb on - strand, within GFF3801at 302.215 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.219 kb on + strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.220 kb on - strandat 302.227 kb on - strandat 302.227 kb on - strandat 302.227 kb on - strandat 302.234 kb on + strandat 302.234 kb on + strandat 302.234 kb on + strandat 302.235 kb on - strandat 302.235 kb on - strandat 302.378 kb on + strandat 302.378 kb on + strandat 302.378 kb on + strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.379 kb on - strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.387 kb on + strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.388 kb on - strandat 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.660 kb on + strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.661 kb on - strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.741 kb on + strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.742 kb on - strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.744 kb on + strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.745 kb on - strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.756 kb on + strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.757 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.892 kb on - strand, within GFF3802at 302.981 kb on + strand, within GFF3802at 302.981 kb on + strand, within GFF3802at 302.982 kb on - strand, within GFF3802at 302.993 kb on + strand, within GFF3802at 302.993 kb on + strand, within GFF3802at 302.994 kb on - strand, within GFF3802at 302.994 kb on - strand, within GFF3802at 303.122 kb on + strand, within GFF3802at 303.123 kb on - strand, within GFF3802at 303.123 kb on - strand, within GFF3802at 303.123 kb on - strand, within GFF3802

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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300,447 + GFF3800 0.14 -1.2
300,447 + GFF3800 0.14 +0.3
300,448 - GFF3800 0.14 +2.3
300,448 - GFF3800 0.14 +0.2
300,448 - GFF3800 0.14 -1.1
300,528 + GFF3800 0.22 +0.8
300,528 + GFF3800 0.22 +0.3
300,529 - GFF3800 0.22 +0.3
300,552 + GFF3800 0.24 +0.3
300,552 + GFF3800 0.24 -0.3
300,553 - GFF3800 0.24 -0.5
300,612 + GFF3800 0.29 +0.0
300,612 + GFF3800 0.29 -0.5
300,612 + GFF3800 0.29 +0.0
300,613 - GFF3800 0.29 -1.4
300,613 - GFF3800 0.29 -0.8
300,613 - GFF3800 0.29 -0.3
300,613 - GFF3800 0.29 +0.5
300,630 + GFF3800 0.31 -0.2
300,630 + GFF3800 0.31 +0.4
300,630 + GFF3800 0.31 -1.2
300,630 + GFF3800 0.31 +0.5
300,630 + GFF3800 0.31 -1.3
300,630 + GFF3800 0.31 +0.1
300,630 + GFF3800 0.31 -1.2
300,630 + GFF3800 0.31 -2.4
300,630 + GFF3800 0.31 -0.2
300,630 + GFF3800 0.31 -1.5
300,631 - GFF3800 0.31 -0.2
300,631 - GFF3800 0.31 -0.3
300,631 - GFF3800 0.31 -0.5
300,631 - GFF3800 0.31 -0.1
300,631 - GFF3800 0.31 -1.5
300,631 - GFF3800 0.31 -0.2
300,631 - GFF3800 0.31 -0.7
301,138 - GFF3800 0.77 +0.1
301,138 - GFF3800 0.77 -0.5
301,138 - GFF3800 0.77 +0.5
301,191 + GFF3800 0.82 -1.5
301,191 + GFF3800 0.82 -1.5
301,191 + GFF3800 0.82 -1.0
301,192 - GFF3800 0.82 +0.2
301,192 - GFF3800 0.82 -1.5
301,192 - GFF3800 0.82 -0.7
301,192 - GFF3800 0.82 -0.1
301,449 + +0.3
301,450 - +0.8
301,450 - -0.7
301,475 - +0.4
301,738 + GFF3801 0.42 -1.0
301,739 - GFF3801 0.43 -1.0
301,739 - GFF3801 0.43 +0.2
301,816 + GFF3801 0.52 -0.6
301,816 + GFF3801 0.52 +0.6
301,816 + GFF3801 0.52 +0.4
301,832 - GFF3801 0.54 -2.0
301,954 + GFF3801 0.70 -1.5
301,954 + GFF3801 0.70 -0.5
301,954 + GFF3801 0.70 -1.5
301,954 + GFF3801 0.70 -0.4
301,954 + GFF3801 0.70 +0.2
301,955 - GFF3801 0.70 -0.6
301,988 - GFF3801 0.74 -0.7
302,086 + GFF3801 0.87 -0.3
302,086 + GFF3801 0.87 +0.0
302,086 + GFF3801 0.87 -0.5
302,086 + GFF3801 0.87 +0.2
302,087 - GFF3801 0.87 -0.9
302,087 - GFF3801 0.87 +2.5
302,087 - GFF3801 0.87 -1.0
302,087 - GFF3801 0.87 +1.4
302,215 + -1.6
302,219 + -0.5
302,219 + -0.7
302,219 + +0.6
302,219 + -1.3
302,219 + +0.6
302,219 + +0.3
302,219 + +0.3
302,219 + +0.8
302,220 - -0.2
302,220 - -1.9
302,220 - -0.2
302,220 - -0.7
302,220 - +0.4
302,220 - -0.6
302,220 - -0.4
302,227 - -0.4
302,227 - +0.1
302,227 - +0.1
302,234 + -0.9
302,234 + +0.7
302,234 + -1.5
302,235 - -1.2
302,235 - -0.5
302,378 + -1.0
302,378 + +0.3
302,378 + -0.0
302,379 - +0.4
302,379 - +0.0
302,379 - +0.1
302,379 - +0.2
302,379 - +0.2
302,379 - -0.5
302,387 + -0.2
302,387 + +2.8
302,387 + -0.3
302,387 + -0.7
302,388 - +0.3
302,388 - -0.1
302,388 - -1.5
302,388 - +0.5
302,660 + GFF3802 0.22 +1.2
302,660 + GFF3802 0.22 -2.0
302,660 + GFF3802 0.22 -0.8
302,660 + GFF3802 0.22 -0.6
302,661 - GFF3802 0.22 +0.3
302,661 - GFF3802 0.22 -0.5
302,661 - GFF3802 0.22 +0.2
302,661 - GFF3802 0.22 -0.1
302,741 + GFF3802 0.26 -1.0
302,741 + GFF3802 0.26 -1.0
302,741 + GFF3802 0.26 -0.9
302,741 + GFF3802 0.26 -0.5
302,741 + GFF3802 0.26 -0.4
302,741 + GFF3802 0.26 +1.1
302,741 + GFF3802 0.26 +1.3
302,741 + GFF3802 0.26 +0.2
302,741 + GFF3802 0.26 +0.7
302,742 - GFF3802 0.26 -0.5
302,742 - GFF3802 0.26 +0.3
302,742 - GFF3802 0.26 -0.5
302,742 - GFF3802 0.26 +0.8
302,742 - GFF3802 0.26 -1.9
302,742 - GFF3802 0.26 -0.2
302,742 - GFF3802 0.26 -0.3
302,742 - GFF3802 0.26 -0.5
302,742 - GFF3802 0.26 +0.0
302,742 - GFF3802 0.26 -0.2
302,742 - GFF3802 0.26 -1.1
302,742 - GFF3802 0.26 -0.8
302,742 - GFF3802 0.26 -0.6
302,742 - GFF3802 0.26 -1.0
302,742 - GFF3802 0.26 -0.5
302,742 - GFF3802 0.26 +0.5
302,742 - GFF3802 0.26 +1.4
302,742 - GFF3802 0.26 -0.6
302,742 - GFF3802 0.26 +1.4
302,744 + GFF3802 0.26 +0.5
302,744 + GFF3802 0.26 +0.0
302,744 + GFF3802 0.26 +0.2
302,744 + GFF3802 0.26 -2.2
302,744 + GFF3802 0.26 -1.6
302,744 + GFF3802 0.26 -1.6
302,744 + GFF3802 0.26 +0.8
302,745 - GFF3802 0.26 -1.3
302,745 - GFF3802 0.26 -0.8
302,745 - GFF3802 0.26 +0.4
302,745 - GFF3802 0.26 -0.3
302,745 - GFF3802 0.26 -2.7
302,745 - GFF3802 0.26 -0.2
302,745 - GFF3802 0.26 -0.4
302,756 + GFF3802 0.27 -0.8
302,756 + GFF3802 0.27 +0.5
302,756 + GFF3802 0.27 -0.7
302,756 + GFF3802 0.27 -0.2
302,756 + GFF3802 0.27 +0.0
302,757 - GFF3802 0.27 -0.2
302,757 - GFF3802 0.27 -0.2
302,757 - GFF3802 0.27 -1.7
302,757 - GFF3802 0.27 +0.0
302,892 - GFF3802 0.35 -0.3
302,892 - GFF3802 0.35 -0.8
302,892 - GFF3802 0.35 +0.6
302,981 + GFF3802 0.40 +0.1
302,981 + GFF3802 0.40 -0.5
302,982 - GFF3802 0.40 -0.8
302,993 + GFF3802 0.41 +0.8
302,993 + GFF3802 0.41 -0.5
302,994 - GFF3802 0.41 -0.3
302,994 - GFF3802 0.41 +0.8
303,122 + GFF3802 0.48 -0.4
303,123 - GFF3802 0.48 +1.5
303,123 - GFF3802 0.48 +1.0
303,123 - GFF3802 0.48 -0.2

Or see this region's nucleotide sequence